RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 NECAB2Q7Z6G3 386 aa18.59■□□□□ 0.57
CLN3-249ENST00000636685 TSPYL6Q8N831 410 aa18.59■□□□□ 0.57
CLN3-249ENST00000636685 CRISPLD2Q9H0B8 497 aa18.59■□□□□ 0.57
CLN3-249ENST00000636685 PAK6Q9NQU5 681 aaPredicted RBP18.59■□□□□ 0.57
CLN3-249ENST00000636685 KCNH4Q9UQ05 1017 aa18.59■□□□□ 0.57
CLN3-249ENST00000636685 SPTBN5Q9NRC6 3674 aaKnown RBP18.58■□□□□ 0.57
CLN3-249ENST00000636685 MAGEA10P43363 369 aaPredicted RBP18.58■□□□□ 0.56
CLN3-249ENST00000636685 GYG1P46976 350 aa18.58■□□□□ 0.56
CLN3-249ENST00000636685 IFIT5Q13325 482 aaKnown RBP18.58■□□□□ 0.56
CLN3-249ENST00000636685 TDHQ8IZJ6 230 aa18.58■□□□□ 0.56
CLN3-249ENST00000636685 PARK7Q99497 189 aaKnown RBP18.58■□□□□ 0.56
CLN3-249ENST00000636685 ZNF341Q9BYN7 854 aa18.58■□□□□ 0.56
CLN3-249ENST00000636685 CHMP3Q9Y3E7 222 aa18.58■□□□□ 0.56
CLN3-249ENST00000636685 AK9Q5TCS8 1911 aa18.58■□□□□ 0.56
CLN3-249ENST00000636685 CAPN2P17655 700 aa18.57■□□□□ 0.56
CLN3-249ENST00000636685 DCAF15Q66K64 600 aa18.57■□□□□ 0.56
CLN3-249ENST00000636685 ZNF594Q96JF6 807 aaPredicted RBP18.57■□□□□ 0.56
CLN3-249ENST00000636685 HIBADHP31937 336 aaKnown RBP18.56■□□□□ 0.56
CLN3-249ENST00000636685 GPAT2Q6NUI2 795 aa18.56■□□□□ 0.56
CLN3-249ENST00000636685 PXYLP1Q8TE99 480 aa18.56■□□□□ 0.56
CLN3-249ENST00000636685 HOOK2Q96ED9 719 aa18.56■□□□□ 0.56
CLN3-249ENST00000636685 FOXO4P98177 505 aa18.55■□□□□ 0.56
CLN3-249ENST00000636685 WDR43Q15061 677 aaKnown RBP eCLIP18.55■□□□□ 0.56
CLN3-249ENST00000636685 FAM83AQ86UY5 434 aa18.55■□□□□ 0.56
CLN3-249ENST00000636685 FAM84BQ96KN1 310 aaPredicted RBP18.55■□□□□ 0.56
CLN3-249ENST00000636685 CHMP4AQ9BY43 222 aa18.55■□□□□ 0.56
CLN3-249ENST00000636685 TMOD2Q9NZR1 351 aa18.55■□□□□ 0.56
CLN3-249ENST00000636685 TAOK2Q9UL54 1235 aa18.55■□□□□ 0.56
CLN3-249ENST00000636685 ADAMTS8Q9UP79 889 aa18.55■□□□□ 0.56
CLN3-249ENST00000636685 DDX60LQ5H9U9 1706 aaKnown RBP18.54■□□□□ 0.56
CLN3-249ENST00000636685 RPTORQ8N122 1335 aa18.54■□□□□ 0.56
CLN3-249ENST00000636685 TEKT1Q969V4 418 aa18.54■□□□□ 0.56
CLN3-249ENST00000636685 GUCD1Q96NT3 240 aa18.54■□□□□ 0.56
CLN3-249ENST00000636685 STK31Q9BXU1 1019 aa18.54■□□□□ 0.56
CLN3-249ENST00000636685 UBE2OQ9C0C9 1292 aaKnown RBP18.54■□□□□ 0.56
CLN3-249ENST00000636685 MYH16Q9H6N6 1097 aa18.54■□□□□ 0.56
CLN3-249ENST00000636685 IQSEC3Q9UPP2 1182 aaPredicted RBP18.54■□□□□ 0.56
CLN3-249ENST00000636685 HDLBPQ00341 1268 aaKnown RBP18.53■□□□□ 0.56
CLN3-249ENST00000636685 CHAF1AQ13111 956 aaPredicted RBP18.53■□□□□ 0.56
CLN3-249ENST00000636685 IRF5Q13568 498 aa18.53■□□□□ 0.56
CLN3-249ENST00000636685 RALBP1Q15311 655 aa18.53■□□□□ 0.56
CLN3-249ENST00000636685 LDHAL6AQ6ZMR3 332 aa18.53■□□□□ 0.56
CLN3-249ENST00000636685 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLN3-249ENST00000636685 PRDM6Q9NQX0 595 aa18.53■□□□□ 0.56
CLN3-249ENST00000636685 CNNM1Q9NRU3 951 aa18.53■□□□□ 0.56
CLN3-249ENST00000636685 EYSQ5T1H1 3165 aa18.52■□□□□ 0.56
CLN3-249ENST00000636685 TNPO2O14787 897 aaKnown RBP18.52■□□□□ 0.56
CLN3-249ENST00000636685 FKBP1CQ5VVH2 108 aa18.52■□□□□ 0.56
CLN3-249ENST00000636685 ZNF112Q9UJU3 913 aa18.52■□□□□ 0.56
CLN3-249ENST00000636685 RPAP1Q9BWH6 1393 aaPredicted RBP18.52■□□□□ 0.55
CLN3-249ENST00000636685 CALD1Q05682 793 aaKnown RBP18.51■□□□□ 0.55
CLN3-249ENST00000636685 UBE4AQ14139 1066 aa18.51■□□□□ 0.55
CLN3-249ENST00000636685 TAF7LQ5H9L4 462 aa18.51■□□□□ 0.55
CLN3-249ENST00000636685 APOBEC3HQ6NTF7 200 aaKnown RBP18.51■□□□□ 0.55
CLN3-249ENST00000636685 LMBR1LQ6UX01 489 aa18.51■□□□□ 0.55
CLN3-249ENST00000636685 ANKLE1Q8NAG6 615 aa18.51■□□□□ 0.55
CLN3-249ENST00000636685 ZDHHC15Q96MV8 337 aa18.51■□□□□ 0.55
CLN3-249ENST00000636685 TTC28Q96AY4 2481 aa18.5■□□□□ 0.55
CLN3-249ENST00000636685 SLC4A2P04920 1241 aa18.5■□□□□ 0.55
CLN3-249ENST00000636685 EPHA10Q5JZY3 1008 aa18.5■□□□□ 0.55
CLN3-249ENST00000636685 LINS1Q8NG48 757 aa18.5■□□□□ 0.55
CLN3-249ENST00000636685 DNAAF4Q8WXU2 420 aa18.5■□□□□ 0.55
CLN3-249ENST00000636685 FAM161BQ96MY7 647 aa18.5■□□□□ 0.55
CLN3-249ENST00000636685 NBPF3Q9H094 633 aa18.5■□□□□ 0.55
CLN3-249ENST00000636685 LAMA2P24043 3122 aaKnown RBP18.49■□□□□ 0.55
CLN3-249ENST00000636685 PTPRFP10586 1907 aa18.49■□□□□ 0.55
CLN3-249ENST00000636685 CXCL11O14625 94 aa18.49■□□□□ 0.55
CLN3-249ENST00000636685 APAF1O14727 1248 aa18.49■□□□□ 0.55
CLN3-249ENST00000636685 CCDC57Q2TAC2 916 aa18.49■□□□□ 0.55
CLN3-249ENST00000636685 NOL9Q5SY16 702 aaKnown RBP18.49■□□□□ 0.55
CLN3-249ENST00000636685 C11orf49Q9H6J7 331 aa18.49■□□□□ 0.55
CLN3-249ENST00000636685 POTEB2H3BUK9 544 aa18.48■□□□□ 0.55
CLN3-249ENST00000636685 FLIIQ13045 1269 aa18.48■□□□□ 0.55
CLN3-249ENST00000636685 GADL1Q6ZQY3 521 aa18.48■□□□□ 0.55
CLN3-249ENST00000636685 TBC1D22AQ8WUA7 517 aa18.48■□□□□ 0.55
CLN3-249ENST00000636685 PRUNE2Q8WUY3 3088 aa18.47■□□□□ 0.55
CLN3-249ENST00000636685 TCP10Q12799 353 aa18.47■□□□□ 0.55
CLN3-249ENST00000636685 FBXO33Q7Z6M2 555 aa18.47■□□□□ 0.55
CLN3-249ENST00000636685 FAM151AQ8WW52 585 aa18.47■□□□□ 0.55
CLN3-249ENST00000636685 TSR2Q969E8 191 aaKnown RBP18.47■□□□□ 0.55
CLN3-249ENST00000636685 COA7Q96BR5 231 aa18.47■□□□□ 0.55
CLN3-249ENST00000636685 PUS3Q9BZE2 481 aaKnown RBP18.47■□□□□ 0.55
CLN3-249ENST00000636685 MYBBP1AQ9BQG0 1328 aaKnown RBP18.47■□□□□ 0.55
CLN3-249ENST00000636685 A0A0G2JLL6 359 aaPredicted RBP18.46■□□□□ 0.55
CLN3-249ENST00000636685 FRAT2O75474 233 aaPredicted RBP18.46■□□□□ 0.55
CLN3-249ENST00000636685 TRIM32Q13049 653 aa18.46■□□□□ 0.55
CLN3-249ENST00000636685 FKBP5Q13451 457 aaPredicted RBP18.46■□□□□ 0.55
CLN3-249ENST00000636685 FAM109BQ6ICB4 259 aaPredicted RBP18.46■□□□□ 0.55
CLN3-249ENST00000636685 FASTKD5Q7L8L6 764 aaKnown RBP18.46■□□□□ 0.55
CLN3-249ENST00000636685 PRRT2Q7Z6L0 340 aaPredicted RBP18.46■□□□□ 0.55
CLN3-249ENST00000636685 VPS37DQ86XT2 251 aa18.46■□□□□ 0.55
CLN3-249ENST00000636685 MRIQ9BWK5 157 aa18.46■□□□□ 0.55
CLN3-249ENST00000636685 MDM2Q00987 491 aaPredicted RBP18.45■□□□□ 0.54
CLN3-249ENST00000636685 SMCR8Q8TEV9 937 aaPredicted RBP18.45■□□□□ 0.54
CLN3-249ENST00000636685 ZHX2Q9Y6X8 837 aa18.45■□□□□ 0.54
CLN3-249ENST00000636685 CACNA1FO60840 1977 aa18.44■□□□□ 0.54
CLN3-249ENST00000636685 PHIPQ8WWQ0 1821 aa18.44■□□□□ 0.54
CLN3-249ENST00000636685 HMGCRP04035 888 aa18.44■□□□□ 0.54
CLN3-249ENST00000636685 HHIPL2Q6UWX4 724 aa18.44■□□□□ 0.54
CLN3-249ENST00000636685 ANKRD13CQ8N6S4 541 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms