RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 OGFOD1Q8N543 542 aa24.66■■□□□ 1.54
CLN3-245ENST00000636172 DPF2Q92785 391 aa24.66■■□□□ 1.54
CLN3-245ENST00000636172 NOL10Q9BSC4 688 aaKnown RBP24.66■■□□□ 1.54
CLN3-245ENST00000636172 HDAC9Q9UKV0 1011 aa24.66■■□□□ 1.54
CLN3-245ENST00000636172 PCDHAC2Q9Y5I4 1007 aa24.66■■□□□ 1.54
CLN3-245ENST00000636172 SHTN1A0MZ66 631 aa24.66■■□□□ 1.54
CLN3-245ENST00000636172 APOBEC3HQ6NTF7 200 aaKnown RBP24.66■■□□□ 1.54
CLN3-245ENST00000636172 CDK5RAP2Q96SN8 1893 aa24.65■■□□□ 1.54
CLN3-245ENST00000636172 PRKAB2O43741 272 aa24.65■■□□□ 1.54
CLN3-245ENST00000636172 RBM5P52756 815 aaKnown RBP eCLIP24.65■■□□□ 1.54
CLN3-245ENST00000636172 ZNF280AP59817 542 aaPredicted RBP24.65■■□□□ 1.54
CLN3-245ENST00000636172 CFAP100Q494V2 611 aa24.65■■□□□ 1.54
CLN3-245ENST00000636172 SH3RF3Q8TEJ3 882 aaPredicted RBP24.65■■□□□ 1.54
CLN3-245ENST00000636172 MAP4K1Q92918 833 aa24.65■■□□□ 1.54
CLN3-245ENST00000636172 DSCC1Q9BVC3 393 aa24.65■■□□□ 1.54
CLN3-245ENST00000636172 SLC4A4Q9Y6R1 1079 aa24.65■■□□□ 1.54
CLN3-245ENST00000636172 EPB41L2O43491 1005 aaKnown RBP24.64■■□□□ 1.53
CLN3-245ENST00000636172 GNAT2P19087 354 aa24.64■■□□□ 1.53
CLN3-245ENST00000636172 RHBDL3P58872 404 aa24.64■■□□□ 1.53
CLN3-245ENST00000636172 CERS3Q8IU89 383 aa24.64■■□□□ 1.53
CLN3-245ENST00000636172 ECM29Q5VYK3 1845 aa24.63■■□□□ 1.53
CLN3-245ENST00000636172 DDNO94850 711 aaPredicted RBP24.63■■□□□ 1.53
CLN3-245ENST00000636172 MICALL2Q8IY33 904 aa24.63■■□□□ 1.53
CLN3-245ENST00000636172 CRNKL1Q9BZJ0 848 aaKnown RBP24.63■■□□□ 1.53
CLN3-245ENST00000636172 UPF2Q9HAU5 1272 aaKnown RBP24.63■■□□□ 1.53
CLN3-245ENST00000636172 GSG1L2A8MUP6 293 aa24.62■■□□□ 1.53
CLN3-245ENST00000636172 PLCG2P16885 1265 aa24.62■■□□□ 1.53
CLN3-245ENST00000636172 MMP14P50281 582 aa24.62■■□□□ 1.53
CLN3-245ENST00000636172 SDR42E1Q8WUS8 393 aa24.62■■□□□ 1.53
CLN3-245ENST00000636172 EPB41L4AQ9HCS5 686 aaPredicted RBP24.62■■□□□ 1.53
CLN3-245ENST00000636172 CNOT7Q9UIV1 285 aaKnown RBP24.62■■□□□ 1.53
CLN3-245ENST00000636172 FOCADQ5VW36 1801 aa24.62■■□□□ 1.53
CLN3-245ENST00000636172 PATL2C9JE40 543 aaKnown RBP24.61■■□□□ 1.53
CLN3-245ENST00000636172 MTMR14Q8NCE2 650 aa24.61■■□□□ 1.53
CLN3-245ENST00000636172 RBM8AQ9Y5S9 174 aaKnown RBP24.61■■□□□ 1.53
CLN3-245ENST00000636172 RPAP1Q9BWH6 1393 aaPredicted RBP24.61■■□□□ 1.53
CLN3-245ENST00000636172 SPDYE2BA6NHP3 402 aa24.61■■□□□ 1.53
CLN3-245ENST00000636172 SPDYE6P0CI01 402 aa24.61■■□□□ 1.53
CLN3-245ENST00000636172 DLGAP5Q15398 846 aa24.61■■□□□ 1.53
CLN3-245ENST00000636172 CDC42EP5Q6NZY7 148 aa24.61■■□□□ 1.53
CLN3-245ENST00000636172 PRMT6Q96LA8 375 aaPredicted RBP24.61■■□□□ 1.53
CLN3-245ENST00000636172 MYOZ2Q9NPC6 264 aa24.61■■□□□ 1.53
CLN3-245ENST00000636172 GPRC5DQ9NZD1 345 aa24.61■■□□□ 1.53
CLN3-245ENST00000636172 APPP05067 770 aa24.6■■□□□ 1.53
CLN3-245ENST00000636172 TEX11Q8IYF3 940 aa24.6■■□□□ 1.53
CLN3-245ENST00000636172 ZNF784Q8NCA9 323 aaPredicted RBP24.6■■□□□ 1.53
CLN3-245ENST00000636172 ZBED3Q96IU2 234 aaPredicted RBP24.6■■□□□ 1.53
CLN3-245ENST00000636172 USP40Q9NVE5 1235 aa24.6■■□□□ 1.53
CLN3-245ENST00000636172 U3KPZ7 1027 aaPredicted RBP24.6■■□□□ 1.53
CLN3-245ENST00000636172 DPY19L2Q6NUT2 758 aa24.59■■□□□ 1.53
CLN3-245ENST00000636172 IFNL3Q8IZI9 196 aa24.59■■□□□ 1.53
CLN3-245ENST00000636172 C22orf23Q9BZE7 217 aa24.59■■□□□ 1.53
CLN3-245ENST00000636172 BAZ2AQ9UIF9 1905 aaKnown RBP24.59■■□□□ 1.53
CLN3-245ENST00000636172 NAV1Q8NEY1 1877 aa24.58■■□□□ 1.53
CLN3-245ENST00000636172 EGFRP00533 1210 aa24.58■■□□□ 1.53
CLN3-245ENST00000636172 FGAP02671 866 aa24.58■■□□□ 1.53
CLN3-245ENST00000636172 NECTIN1Q15223 517 aa24.58■■□□□ 1.53
CLN3-245ENST00000636172 ALX1Q15699 326 aa24.58■■□□□ 1.53
CLN3-245ENST00000636172 TGFBRAP1Q8WUH2 860 aa24.58■■□□□ 1.53
CLN3-245ENST00000636172 TBC1D32Q96NH3 1257 aa24.58■■□□□ 1.53
CLN3-245ENST00000636172 ZMYM6O95789 1325 aa24.58■■□□□ 1.53
CLN3-245ENST00000636172 WDHD1O75717 1129 aaPredicted RBP24.57■■□□□ 1.52
CLN3-245ENST00000636172 HSPA4P34932 840 aa24.57■■□□□ 1.52
CLN3-245ENST00000636172 GIMAP6Q6P9H5 292 aa24.57■■□□□ 1.52
CLN3-245ENST00000636172 NACAP1Q9BZK3 213 aa24.57■■□□□ 1.52
CLN3-245ENST00000636172 TDRD3Q9H7E2 651 aaKnown RBP24.57■■□□□ 1.52
CLN3-245ENST00000636172 DCP1AQ9NPI6 582 aaPredicted RBP24.57■■□□□ 1.52
CLN3-245ENST00000636172 ATP8A2Q9NTI2 1148 aa24.57■■□□□ 1.52
CLN3-245ENST00000636172 DDX60LQ5H9U9 1706 aaKnown RBP24.57■■□□□ 1.52
CLN3-245ENST00000636172 LAMA4Q16363 1823 aa24.57■■□□□ 1.52
CLN3-245ENST00000636172 GLTPD2A6NH11 291 aa24.56■■□□□ 1.52
CLN3-245ENST00000636172 H7C1D1 291 aa24.56■■□□□ 1.52
CLN3-245ENST00000636172 USP5P45974 858 aa24.56■■□□□ 1.52
CLN3-245ENST00000636172 SAMD7Q7Z3H4 446 aa24.56■■□□□ 1.52
CLN3-245ENST00000636172 MKRN1Q9UHC7 482 aaKnown RBP24.56■■□□□ 1.52
CLN3-245ENST00000636172 EPS15P42566 896 aa24.56■■□□□ 1.52
CLN3-245ENST00000636172 TDO2P48775 406 aa24.56■■□□□ 1.52
CLN3-245ENST00000636172 RBM25P49756 843 aaKnown RBP24.56■■□□□ 1.52
CLN3-245ENST00000636172 L3MBTL3Q96JM7 780 aaPredicted RBP24.56■■□□□ 1.52
CLN3-245ENST00000636172 NAPBQ9H115 298 aa24.56■■□□□ 1.52
CLN3-245ENST00000636172 WNT10BO00744 389 aa24.55■■□□□ 1.52
CLN3-245ENST00000636172 NBPF9Q3BBW0 867 aa24.55■■□□□ 1.52
CLN3-245ENST00000636172 TBC1D10BQ4KMP7 808 aaPredicted RBP24.55■■□□□ 1.52
CLN3-245ENST00000636172 RBM26Q5T8P6 1007 aaKnown RBP24.55■■□□□ 1.52
CLN3-245ENST00000636172 CREB3L3Q68CJ9 461 aa24.55■■□□□ 1.52
CLN3-245ENST00000636172 MAPKAPK5Q8IW41 473 aa24.55■■□□□ 1.52
CLN3-245ENST00000636172 CTNNA3Q9UI47 895 aa24.55■■□□□ 1.52
CLN3-245ENST00000636172 PALD1Q9ULE6 856 aa24.55■■□□□ 1.52
CLN3-245ENST00000636172 FLT1P17948 1338 aa24.55■■□□□ 1.52
CLN3-245ENST00000636172 SLC27A2O14975 620 aa24.54■■□□□ 1.52
CLN3-245ENST00000636172 MCCP23508 829 aa24.54■■□□□ 1.52
CLN3-245ENST00000636172 CACNB3P54284 484 aa24.54■■□□□ 1.52
CLN3-245ENST00000636172 NFIAQ12857 509 aa24.54■■□□□ 1.52
CLN3-245ENST00000636172 KIF4BQ2VIQ3 1234 aa24.54■■□□□ 1.52
CLN3-245ENST00000636172 SPDYE2Q495Y8 402 aa24.54■■□□□ 1.52
CLN3-245ENST00000636172 DDX4Q9NQI0 724 aaKnown RBP24.54■■□□□ 1.52
CLN3-245ENST00000636172 LAMB1P07942 1786 aa24.53■■□□□ 1.52
CLN3-245ENST00000636172 LMOD1P29536 600 aaPredicted RBP24.53■■□□□ 1.52
CLN3-245ENST00000636172 TRPM4Q8TD43 1214 aa24.53■■□□□ 1.52
CLN3-245ENST00000636172 KCNB2Q92953 911 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms