RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 OGFOD3Q6PK18 319 aa6.66□□□□□ -1.34
SCN1A-211ENST00000635893 ASIC4Q96FT7 647 aa6.66□□□□□ -1.34
SCN1A-211ENST00000635893 FAM129BQ96TA1 746 aa6.66□□□□□ -1.34
SCN1A-211ENST00000635893 WDR18Q9BV38 432 aa6.66□□□□□ -1.34
SCN1A-211ENST00000635893 PAK6Q9NQU5 681 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-211ENST00000635893 C1GALT1Q9NS00 363 aa6.66□□□□□ -1.34
SCN1A-211ENST00000635893 DAGLAQ9Y4D2 1042 aa6.66□□□□□ -1.34
SCN1A-211ENST00000635893 COL19A1Q14993 1142 aa6.65□□□□□ -1.34
SCN1A-211ENST00000635893 PRPF40BQ6NWY9 871 aaKnown RBP6.65□□□□□ -1.34
SCN1A-211ENST00000635893 DNAJC25Q9H1X3 360 aa6.65□□□□□ -1.34
SCN1A-211ENST00000635893 PPP1R9AQ9ULJ8 1098 aa6.65□□□□□ -1.34
SCN1A-211ENST00000635893 DYNC1LI2O43237 492 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-211ENST00000635893 JUNBP17275 347 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-211ENST00000635893 ITGB5P18084 799 aa6.64□□□□□ -1.35
SCN1A-211ENST00000635893 CCDC74AQ96AQ1 378 aa6.64□□□□□ -1.35
SCN1A-211ENST00000635893 ABCB6Q9NP58 842 aa6.64□□□□□ -1.35
SCN1A-211ENST00000635893 KRTAP4-8A0A0G2JLE6 195 aa6.63□□□□□ -1.35
SCN1A-211ENST00000635893 TMEM238LA0A1B0GVL6 79 aa6.63□□□□□ -1.35
SCN1A-211ENST00000635893 EIF1AYO14602 144 aaKnown RBP6.63□□□□□ -1.35
SCN1A-211ENST00000635893 GADD45BO75293 160 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-211ENST00000635893 CYP27C1Q4G0S4 372 aa6.63□□□□□ -1.35
SCN1A-211ENST00000635893 TRAK1Q9UPV9 953 aa6.63□□□□□ -1.35
SCN1A-211ENST00000635893 SLC5A6Q9Y289 635 aa6.63□□□□□ -1.35
SCN1A-211ENST00000635893 TMPRSS2O15393 492 aa6.62□□□□□ -1.35
SCN1A-211ENST00000635893 SLFN14P0C7P3 912 aa6.62□□□□□ -1.35
SCN1A-211ENST00000635893 LIG1P18858 919 aa6.62□□□□□ -1.35
SCN1A-211ENST00000635893 HNRNPUQ00839 825 aaKnown RBP eCLIP6.62□□□□□ -1.35
SCN1A-211ENST00000635893 OGFOD2Q6N063 350 aa6.62□□□□□ -1.35
SCN1A-211ENST00000635893 STK11IPQ8N1F8 1099 aa6.62□□□□□ -1.35
SCN1A-211ENST00000635893 BCL7CQ8WUZ0 217 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-211ENST00000635893 NIF3L1Q9GZT8 377 aa6.62□□□□□ -1.35
SCN1A-211ENST00000635893 LGR6Q9HBX8 967 aa6.62□□□□□ -1.35
SCN1A-211ENST00000635893 CRIM1Q9NZV1 1036 aa6.62□□□□□ -1.35
SCN1A-211ENST00000635893 GPR182O15218 404 aa6.61□□□□□ -1.35
SCN1A-211ENST00000635893 IGHA2P01877 340 aa6.61□□□□□ -1.35
SCN1A-211ENST00000635893 ID3Q02535 119 aa6.61□□□□□ -1.35
SCN1A-211ENST00000635893 FZD5Q13467 585 aa6.61□□□□□ -1.35
SCN1A-211ENST00000635893 TMC1Q8TDI8 760 aa6.61□□□□□ -1.35
SCN1A-211ENST00000635893 MISP3Q96FF7 219 aa6.61□□□□□ -1.35
SCN1A-211ENST00000635893 ATXN3LQ9H3M9 355 aa6.61□□□□□ -1.35
SCN1A-211ENST00000635893 CCDC86Q9H6F5 360 aaKnown RBP6.61□□□□□ -1.35
SCN1A-211ENST00000635893 PIDD1Q9HB75 910 aa6.61□□□□□ -1.35
SCN1A-211ENST00000635893 KRT82Q9NSB4 513 aa6.61□□□□□ -1.35
SCN1A-211ENST00000635893 ARID1BQ8NFD5 2236 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-211ENST00000635893 ZNF157P51786 506 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-211ENST00000635893 FAAP100Q0VG06 881 aa6.6□□□□□ -1.35
SCN1A-211ENST00000635893 POU5F2Q8N7G0 328 aa6.6□□□□□ -1.35
SCN1A-211ENST00000635893 GLIS3Q8NEA6 775 aa6.6□□□□□ -1.35
SCN1A-211ENST00000635893 WDR89Q96FK6 387 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-211ENST00000635893 FANCD2OSQ96PS1 177 aa6.6□□□□□ -1.35
SCN1A-211ENST00000635893 GSTP1P09211 210 aaKnown RBP6.59□□□□□ -1.35
SCN1A-211ENST00000635893 GRM2Q14416 872 aa6.59□□□□□ -1.35
SCN1A-211ENST00000635893 PLCL1Q15111 1095 aa6.59□□□□□ -1.35
SCN1A-211ENST00000635893 KIF4BQ2VIQ3 1234 aa6.59□□□□□ -1.35
SCN1A-211ENST00000635893 TXNDC2Q86VQ3 553 aa6.59□□□□□ -1.35
SCN1A-211ENST00000635893 SMYD4Q8IYR2 804 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-211ENST00000635893 DMRTB1Q96MA1 342 aa6.59□□□□□ -1.35
SCN1A-211ENST00000635893 CSRNP1Q96S65 589 aa6.59□□□□□ -1.35
SCN1A-211ENST00000635893 ZC3H12CQ9C0D7 883 aaKnown RBP6.59□□□□□ -1.35
SCN1A-211ENST00000635893 ZNF862O60290 1169 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 FAM87AP0C7U9 286 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 PPP2R3AQ06190 1150 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 CDK5R2Q13319 367 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 DTHD1Q6ZMT9 781 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 ZNF574Q6ZN55 896 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-211ENST00000635893 SPRED2Q7Z698 418 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 WFDC3Q8IUB2 231 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 NETO1Q8TDF5 533 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 ALKBH8Q96BT7 664 aaKnown RBP6.58□□□□□ -1.36
SCN1A-211ENST00000635893 DISC1Q9NRI5 854 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 TMEM39AQ9NV64 488 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 PPP4R2Q9NY27 417 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 PCDHGC5Q9Y5F6 944 aa6.58□□□□□ -1.36
SCN1A-211ENST00000635893 BIN1O00499 593 aa6.57□□□□□ -1.36
SCN1A-211ENST00000635893 ZNF792Q3KQV3 632 aa6.57□□□□□ -1.36
SCN1A-211ENST00000635893 EPS8L3Q8TE67 593 aaKnown RBP6.57□□□□□ -1.36
SCN1A-211ENST00000635893 RBCK1Q9BYM8 510 aa6.57□□□□□ -1.36
SCN1A-211ENST00000635893 GPN3Q9UHW5 284 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-211ENST00000635893 PAPLNO95428 1278 aa6.56□□□□□ -1.36
SCN1A-211ENST00000635893 XRCC5P13010 732 aaKnown RBP6.56□□□□□ -1.36
SCN1A-211ENST00000635893 FCGRTP55899 365 aa6.56□□□□□ -1.36
SCN1A-211ENST00000635893 BNIP3Q12983 259 aa6.56□□□□□ -1.36
SCN1A-211ENST00000635893 TTLL4Q14679 1199 aa6.56□□□□□ -1.36
SCN1A-211ENST00000635893 PLD6Q8N2A8 252 aaKnown RBP6.56□□□□□ -1.36
SCN1A-211ENST00000635893 MKNK2Q9HBH9 465 aa6.56□□□□□ -1.36
SCN1A-211ENST00000635893 NLRP2Q9NX02 1062 aa6.56□□□□□ -1.36
SCN1A-211ENST00000635893 PCOLCE2Q9UKZ9 415 aa6.56□□□□□ -1.36
SCN1A-211ENST00000635893 RNGTTO60942 597 aaKnown RBP6.55□□□□□ -1.36
SCN1A-211ENST00000635893 C8AP07357 584 aa6.55□□□□□ -1.36
SCN1A-211ENST00000635893 FUT4P22083 530 aa6.55□□□□□ -1.36
SCN1A-211ENST00000635893 PRKCQQ04759 706 aa6.55□□□□□ -1.36
SCN1A-211ENST00000635893 PDZD3Q86UT5 571 aa6.55□□□□□ -1.36
SCN1A-211ENST00000635893 FAM181AQ8N9Y4 354 aa6.55□□□□□ -1.36
SCN1A-211ENST00000635893 CCER1Q8TC90 406 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-211ENST00000635893 KCNB2Q92953 911 aa6.55□□□□□ -1.36
SCN1A-211ENST00000635893 VAV3Q9UKW4 847 aa6.55□□□□□ -1.36
SCN1A-211ENST00000635893 CD8BP10966 210 aa6.54□□□□□ -1.36
SCN1A-211ENST00000635893 HCLS1P14317 486 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-211ENST00000635893 JAG1P78504 1218 aa6.54□□□□□ -1.36
SCN1A-211ENST00000635893 PDE4CQ08493 712 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms