RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 CSADQ9Y600 493 aa10.54□□□□□ -0.72
GGA3-223ENST00000621870 RNF123Q5XPI4 1314 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 RAD17O75943 681 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 F13A1P00488 732 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 NEFHP12036 1026 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 JAKMIP3Q5VZ66 844 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 SULF1Q8IWU6 871 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 LRRC27Q9C0I9 530 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 THRAP3Q9Y2W1 955 aaKnown RBP10.53□□□□□ -0.72
GGA3-223ENST00000621870 ADGBQ8N7X0 1667 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 ABCC4O15439 1325 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 TNNT1P13805 278 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 ADORA1P30542 326 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 IRX3P78415 501 aaPredicted RBP10.53□□□□□ -0.72
GGA3-223ENST00000621870 DTHD1Q6ZMT9 781 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 CERS3Q8IU89 383 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.53□□□□□ -0.72
GGA3-223ENST00000621870 HEG1Q9ULI3 1381 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 CLRN2A0PK11 232 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 HSPA1LP34931 641 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 UBE4AQ14139 1066 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 USH1GQ495M9 461 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 DNAI2Q9GZS0 605 aa10.53□□□□□ -0.72
GGA3-223ENST00000621870 CFBP00751 764 aa10.52□□□□□ -0.72
GGA3-223ENST00000621870 CETN2P41208 172 aa10.52□□□□□ -0.72
GGA3-223ENST00000621870 ZNF174Q15697 407 aa10.52□□□□□ -0.72
GGA3-223ENST00000621870 FAM173BQ6P4H8 233 aa10.52□□□□□ -0.72
GGA3-223ENST00000621870 TTC16Q8NEE8 873 aa10.52□□□□□ -0.72
GGA3-223ENST00000621870 PHKBQ93100 1093 aa10.52□□□□□ -0.72
GGA3-223ENST00000621870 GJD4Q96KN9 370 aaPredicted RBP10.52□□□□□ -0.72
GGA3-223ENST00000621870 COPRSQ9NQ92 184 aa10.52□□□□□ -0.72
GGA3-223ENST00000621870 IBTKQ9P2D0 1353 aaPredicted RBP10.52□□□□□ -0.73
GGA3-223ENST00000621870 PATL2C9JE40 543 aaKnown RBP10.52□□□□□ -0.73
GGA3-223ENST00000621870 PHACTR2O75167 634 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 SYT1P21579 422 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 RPS6KB1P23443 525 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 CCDC112Q8NEF3 446 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 SPAG5Q96R06 1193 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 KDM5CP41229 1560 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 GCC2Q8IWJ2 1684 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 VWA3AA6NCI4 1184 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 CHMP2AO43633 222 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 BBOX1O75936 387 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 MYCLP12524 364 aaPredicted RBP10.52□□□□□ -0.73
GGA3-223ENST00000621870 STX1AQ16623 288 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 AKNAD1Q5T1N1 836 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 FAM212AQ96EL1 285 aa10.52□□□□□ -0.73
GGA3-223ENST00000621870 PPEF1O14829 653 aaPredicted RBP10.51□□□□□ -0.73
GGA3-223ENST00000621870 RBM28Q9NW13 759 aaKnown RBP10.51□□□□□ -0.73
GGA3-223ENST00000621870 SNX14Q9Y5W7 946 aa10.51□□□□□ -0.73
GGA3-223ENST00000621870 XDHP47989 1333 aa10.51□□□□□ -0.73
GGA3-223ENST00000621870 DRC1Q96MC2 740 aa10.51□□□□□ -0.73
GGA3-223ENST00000621870 PAGR1Q9BTK6 254 aa10.51□□□□□ -0.73
GGA3-223ENST00000621870 NOD1Q9Y239 953 aa10.51□□□□□ -0.73
GGA3-223ENST00000621870 A0A0D9SFI3 127 aa10.51□□□□□ -0.73
GGA3-223ENST00000621870 PSMA7O14818 248 aa10.51□□□□□ -0.73
GGA3-223ENST00000621870 RPS6KA4O75676 772 aa10.51□□□□□ -0.73
GGA3-223ENST00000621870 DIS3L2Q8IYB7 885 aaKnown RBP10.51□□□□□ -0.73
GGA3-223ENST00000621870 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.51□□□□□ -0.73
GGA3-223ENST00000621870 DBNLQ9UJU6 430 aaKnown RBP10.51□□□□□ -0.73
GGA3-223ENST00000621870 ERLIN2O94905 339 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 HLFQ16534 295 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 SUSD4Q5VX71 490 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 TMC6Q7Z403 805 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 ATG3Q9NT62 314 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 SNAP23O00161 211 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 BTDP43251 543 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 AXDND1Q5T1B0 1012 aaPredicted RBP10.5□□□□□ -0.73
GGA3-223ENST00000621870 PI16Q6UXB8 463 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 PIK3AP1Q6ZUJ8 805 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 HS2ST1Q7LGA3 356 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 KIFC2Q96AC6 838 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 KIF24Q5T7B8 1368 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 FAM13AO94988 1023 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 DEXIO95424 95 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 STX17P56962 302 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 RMND1Q9NWS8 449 aa10.5□□□□□ -0.73
GGA3-223ENST00000621870 TRMT1Q9NXH9 659 aaKnown RBP10.5□□□□□ -0.73
GGA3-223ENST00000621870 YEATS4O95619 227 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 TNNT3P45378 269 aaPredicted RBP10.49□□□□□ -0.73
GGA3-223ENST00000621870 DCPSQ96C86 337 aaKnown RBP10.49□□□□□ -0.73
GGA3-223ENST00000621870 CENPHQ9H3R5 247 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 GPHNQ9NQX3 736 aaPredicted RBP10.49□□□□□ -0.73
GGA3-223ENST00000621870 LEMD3Q9Y2U8 911 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 C21orf2O43822 256 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 ZBED4O75132 1171 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 NOP2P46087 812 aaKnown RBP10.49□□□□□ -0.73
GGA3-223ENST00000621870 EN1Q05925 392 aaPredicted RBP10.49□□□□□ -0.73
GGA3-223ENST00000621870 PPARAQ07869 468 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 NCBP1Q09161 790 aaKnown RBP10.49□□□□□ -0.73
GGA3-223ENST00000621870 SNX21Q969T3 373 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 AOX1Q06278 1338 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 ERVV-1B6SEH8 477 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 AKR1B10O60218 316 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 HARSP12081 509 aaKnown RBP10.49□□□□□ -0.73
GGA3-223ENST00000621870 KRT13P13646 458 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 TXKP42681 527 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 MAP3K9P80192 1104 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 TXNRD1Q16881 649 aa10.49□□□□□ -0.73
GGA3-223ENST00000621870 KIF4BQ2VIQ3 1234 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms