RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SDR42E1Q8WUS8 393 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 CYP46A1Q9Y6A2 500 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 ADAMTSL1Q8N6G6 1762 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 RPS6KB1P23443 525 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 PPP4CP60510 307 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 DACT2Q5SW24 774 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 STRIP1Q5VSL9 837 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 NEK1Q96PY6 1258 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 SRCAPQ6ZRS2 3230 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 FOCADQ5VW36 1801 aa16.98■□□□□ 0.31
USP39-220ENST00000613444 GAKO14976 1311 aa16.97■□□□□ 0.31
USP39-220ENST00000613444 ZNF213O14771 459 aa16.97■□□□□ 0.31
USP39-220ENST00000613444 MCM2P49736 904 aa16.97■□□□□ 0.31
USP39-220ENST00000613444 AK2P54819 239 aa16.97■□□□□ 0.31
USP39-220ENST00000613444 FKBP1AP62942 108 aaKnown RBP16.97■□□□□ 0.31
USP39-220ENST00000613444 BLOC1S2Q6QNY1 142 aa16.97■□□□□ 0.31
USP39-220ENST00000613444 VPS33BQ9H267 617 aa16.97■□□□□ 0.31
USP39-220ENST00000613444 ZNF277Q9NRM2 450 aaPredicted RBP16.97■□□□□ 0.31
USP39-220ENST00000613444 LAMB1P07942 1786 aa16.97■□□□□ 0.31
USP39-220ENST00000613444 GPR75-ASB3A0A0A6YYF3 556 aa16.96■□□□□ 0.31
USP39-220ENST00000613444 LDHCP07864 332 aa16.96■□□□□ 0.31
USP39-220ENST00000613444 FBXW7Q969H0 707 aa16.96■□□□□ 0.31
USP39-220ENST00000613444 NAPBQ9H115 298 aa16.96■□□□□ 0.31
USP39-220ENST00000613444 UTRNP46939 3433 aa16.96■□□□□ 0.31
USP39-220ENST00000613444 TBC1D10CQ8IV04 446 aa16.96■□□□□ 0.31
USP39-220ENST00000613444 ALDH8A1Q9H2A2 487 aaPredicted RBP16.96■□□□□ 0.31
USP39-220ENST00000613444 PDRG1Q9NUG6 133 aa16.96■□□□□ 0.31
USP39-220ENST00000613444 USP17L3A6NCW0 530 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 USP17L4A6NCW7 530 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 GIMAP6Q6P9H5 292 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 USP17L1Q7RTZ2 530 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 NACAP1Q9BZK3 213 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 MKRN1Q9UHC7 482 aaKnown RBP16.95■□□□□ 0.3
USP39-220ENST00000613444 NFKBIEO00221 500 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 EXOSC10Q01780 885 aaKnown RBP16.95■□□□□ 0.3
USP39-220ENST00000613444 TMX3Q96JJ7 454 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 TCEANC2Q96MN5 208 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 TACC3Q9Y6A5 838 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 DDX60LQ5H9U9 1706 aaKnown RBP16.95■□□□□ 0.3
USP39-220ENST00000613444 NAV1Q8NEY1 1877 aa16.95■□□□□ 0.3
USP39-220ENST00000613444 ECM29Q5VYK3 1845 aa16.94■□□□□ 0.3
USP39-220ENST00000613444 TDO2P48775 406 aa16.94■□□□□ 0.3
USP39-220ENST00000613444 NKX2-3Q8TAU0 364 aa16.94■□□□□ 0.3
USP39-220ENST00000613444 SH3RF3Q8TEJ3 882 aaPredicted RBP16.94■□□□□ 0.3
USP39-220ENST00000613444 CRNKL1Q9BZJ0 848 aaKnown RBP16.94■□□□□ 0.3
USP39-220ENST00000613444 DCP1AQ9NPI6 582 aaPredicted RBP16.94■□□□□ 0.3
USP39-220ENST00000613444 TTF2Q9UNY4 1162 aaKnown RBP16.94■□□□□ 0.3
USP39-220ENST00000613444 BCS1LQ9Y276 419 aa16.94■□□□□ 0.3
USP39-220ENST00000613444 HMGB1P09429 215 aaKnown RBP16.94■□□□□ 0.3
USP39-220ENST00000613444 BTDP43251 543 aa16.94■□□□□ 0.3
USP39-220ENST00000613444 SLF2Q8IX21 1173 aa16.94■□□□□ 0.3
USP39-220ENST00000613444 LARGE2Q8N3Y3 721 aa16.94■□□□□ 0.3
USP39-220ENST00000613444 DAGLAQ9Y4D2 1042 aa16.94■□□□□ 0.3
USP39-220ENST00000613444 F8W031 263 aaPredicted RBP16.93■□□□□ 0.3
USP39-220ENST00000613444 BAG3O95817 575 aa16.93■□□□□ 0.3
USP39-220ENST00000613444 IARSP41252 1262 aaKnown RBP16.93■□□□□ 0.3
USP39-220ENST00000613444 RHBDL3P58872 404 aa16.93■□□□□ 0.3
USP39-220ENST00000613444 TOB2Q14106 344 aaPredicted RBP16.93■□□□□ 0.3
USP39-220ENST00000613444 DHX32Q7L7V1 743 aaKnown RBP16.93■□□□□ 0.3
USP39-220ENST00000613444 SPRYD3Q8NCJ5 442 aa16.93■□□□□ 0.3
USP39-220ENST00000613444 TAOK3Q9H2K8 898 aa16.93■□□□□ 0.3
USP39-220ENST00000613444 ATP8A2Q9NTI2 1148 aa16.93■□□□□ 0.3
USP39-220ENST00000613444 ANAPC4Q9UJX5 808 aa16.93■□□□□ 0.3
USP39-220ENST00000613444 SMIM22K7EJ46 135 aa16.92■□□□□ 0.3
USP39-220ENST00000613444 MB21D2Q8IYB1 491 aaPredicted RBP16.92■□□□□ 0.3
USP39-220ENST00000613444 DDIT3P35638 169 aa16.92■□□□□ 0.3
USP39-220ENST00000613444 CTDSPL2Q05D32 466 aa16.92■□□□□ 0.3
USP39-220ENST00000613444 CUL4AQ13619 759 aa16.92■□□□□ 0.3
USP39-220ENST00000613444 CTR9Q6PD62 1173 aa16.92■□□□□ 0.3
USP39-220ENST00000613444 NOL8Q76FK4 1167 aaKnown RBP16.92■□□□□ 0.3
USP39-220ENST00000613444 CERS3Q8IU89 383 aa16.92■□□□□ 0.3
USP39-220ENST00000613444 LARP6Q9BRS8 491 aaKnown RBP16.92■□□□□ 0.3
USP39-220ENST00000613444 FHDC1Q9C0D6 1143 aaPredicted RBP16.92■□□□□ 0.3
USP39-220ENST00000613444 LIMCH1Q9UPQ0 1083 aa16.92■□□□□ 0.3
USP39-220ENST00000613444 LTBP3Q9NS15 1303 aa16.92■□□□□ 0.3
USP39-220ENST00000613444 MYH1P12882 1939 aa16.92■□□□□ 0.3
USP39-220ENST00000613444 PPARAQ07869 468 aa16.91■□□□□ 0.3
USP39-220ENST00000613444 HHIPL2Q6UWX4 724 aa16.91■□□□□ 0.3
USP39-220ENST00000613444 MRIQ9BWK5 157 aa16.91■□□□□ 0.3
USP39-220ENST00000613444 AGXT2Q9BYV1 514 aa16.91■□□□□ 0.3
USP39-220ENST00000613444 INCENPQ9NQS7 918 aa16.91■□□□□ 0.3
USP39-220ENST00000613444 SCNN1DP51172 638 aa16.91■□□□□ 0.3
USP39-220ENST00000613444 NCOA7Q8NI08 942 aa16.91■□□□□ 0.3
USP39-220ENST00000613444 STAG1Q8WVM7 1258 aa16.91■□□□□ 0.3
USP39-220ENST00000613444 NEDD4P46934 1319 aa16.91■□□□□ 0.3
USP39-220ENST00000613444 CYP2D7A0A087X1C5 515 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 USP17L12C9JPN9 530 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 USP17L21D6R901 530 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 LARGE1O95461 756 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 PRELPP51888 382 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 ANTXR2P58335 489 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 EVX2Q03828 476 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 SBK1Q52WX2 424 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 AKNAD1Q5T1N1 836 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 KIAA0825Q8IV33 1275 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 FBXL16Q8N461 479 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 NOL10Q9BSC4 688 aaKnown RBP16.9■□□□□ 0.3
USP39-220ENST00000613444 SLKQ9H2G2 1235 aaPredicted RBP16.9■□□□□ 0.3
USP39-220ENST00000613444 TPCN1Q9ULQ1 816 aa16.9■□□□□ 0.3
USP39-220ENST00000613444 ZNRF3Q9ULT6 936 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms