RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ATF7IPQ6VMQ6 1270 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 OTOP1Q7RTM1 612 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 ERO1BQ86YB8 467 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 FAM151AQ8WW52 585 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 BRI3BPQ8WY22 251 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 ZKSCAN4Q969J2 545 aaPredicted RBP9.46□□□□□ -0.9
CUX1-219ENST00000606749 OTUD5Q96G74 571 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 ERO1AQ96HE7 468 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 WRNIP1Q96S55 665 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 USP40Q9NVE5 1235 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 TNNQ9UQP3 1299 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 AKAP2Q9Y2D5 859 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 TRIM17Q9Y577 477 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 SNCAIPQ9Y6H5 919 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.46□□□□□ -0.9
CUX1-219ENST00000606749 SALL1Q9NSC2 1324 aa9.46□□□□□ -0.9
CUX1-219ENST00000606749 CCL15-CCL14A0A0B4J2E2 113 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 SPDYE5A6NIY4 337 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 TFCP2Q12800 502 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 NFIAQ12857 509 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 CCL15Q16663 113 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 FAM43AQ8N2R8 423 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 CD99L2Q8TCZ2 262 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 FRAT1Q92837 279 aaPredicted RBP9.45□□□□□ -0.9
CUX1-219ENST00000606749 CLUAP1Q96AJ1 413 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 XAGE2Q96GT9 111 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 ZNF341Q9BYN7 854 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 FAM198AQ9UFP1 575 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 ZNF112Q9UJU3 913 aa9.45□□□□□ -0.9
CUX1-219ENST00000606749 TNRC18O15417 2968 aaPredicted RBP9.45□□□□□ -0.9
CUX1-219ENST00000606749 A0A1B0GUL7 405 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 IRF6O14896 467 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 GNAI2P04899 355 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 CETPP11597 493 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 INPP5BP32019 993 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 CAP1Q01518 475 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 RASGRF1Q13972 1273 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 ZFPM1Q8IX07 1006 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 MIER1Q8N108 512 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 ZGPATQ8N5A5 531 aaKnown RBP9.44□□□□□ -0.9
CUX1-219ENST00000606749 FAM163AQ96GL9 167 aaPredicted RBP9.44□□□□□ -0.9
CUX1-219ENST00000606749 ZFYVE28Q9HCC9 887 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 PTPN22Q9Y2R2 807 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 RPAP1Q9BWH6 1393 aaPredicted RBP9.44□□□□□ -0.9
CUX1-219ENST00000606749 LAMB1P07942 1786 aa9.44□□□□□ -0.9
CUX1-219ENST00000606749 OTOFQ9HC10 1997 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 PDS5AQ29RF7 1337 aaKnown RBP9.43□□□□□ -0.9
CUX1-219ENST00000606749 PNMA6EA0A0J9YXQ4 647 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 BTBD19C9JJ37 291 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 PPATQ06203 517 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 PPIL2Q13356 520 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 SNAPC2Q13487 334 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 MVPQ14764 893 aaKnown RBP9.43□□□□□ -0.9
CUX1-219ENST00000606749 TAF1CQ15572 869 aaPredicted RBP9.43□□□□□ -0.9
CUX1-219ENST00000606749 SPTY2D1Q68D10 685 aaPredicted RBP9.43□□□□□ -0.9
CUX1-219ENST00000606749 NEUROD6Q96NK8 337 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 IDI2Q9BXS1 227 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 EFCC1Q9HA90 598 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 ZCCHC17Q9NP64 241 aaKnown RBP9.43□□□□□ -0.9
CUX1-219ENST00000606749 ABCF2Q9UG63 623 aa9.43□□□□□ -0.9
CUX1-219ENST00000606749 GAKO14976 1311 aa9.42□□□□□ -0.9
CUX1-219ENST00000606749 TLR2O60603 784 aa9.42□□□□□ -0.9
CUX1-219ENST00000606749 ENTPD3O75355 529 aa9.42□□□□□ -0.9
CUX1-219ENST00000606749 RGS3P49796 1198 aa9.42□□□□□ -0.9
CUX1-219ENST00000606749 MECOMQ03112 1051 aa9.42□□□□□ -0.9
CUX1-219ENST00000606749 G3BP1Q13283 466 aaKnown RBP eCLIP9.42□□□□□ -0.9
CUX1-219ENST00000606749 ZKSCAN2Q63HK3 967 aa9.42□□□□□ -0.9
CUX1-219ENST00000606749 ERICH6Q7L0X2 663 aa9.42□□□□□ -0.9
CUX1-219ENST00000606749 DZIP1Q86YF9 867 aaKnown RBP9.42□□□□□ -0.9
CUX1-219ENST00000606749 SLF2Q8IX21 1173 aa9.42□□□□□ -0.9
CUX1-219ENST00000606749 TMEM57Q8N5G2 664 aa9.42□□□□□ -0.9
CUX1-219ENST00000606749 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.42□□□□□ -0.9
CUX1-219ENST00000606749 HTTP42858 3142 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 MYH13Q9UKX3 1938 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 GPR75-ASB3A0A0A6YYF3 556 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 PHF20L1A8MW92 1017 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 WDHD1O75717 1129 aaPredicted RBP9.41□□□□□ -0.9
CUX1-219ENST00000606749 ATP8B2P98198 1209 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 HNRNPUQ00839 825 aaKnown RBP eCLIP9.41□□□□□ -0.9
CUX1-219ENST00000606749 MAP3K10Q02779 954 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 POLA2Q14181 598 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 ARHGEF6Q15052 776 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 NOL9Q5SY16 702 aaKnown RBP9.41□□□□□ -0.9
CUX1-219ENST00000606749 GORABQ5T7V8 394 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 TBC1D9Q6ZT07 1266 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 SH3BP5LQ7L8J4 393 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 SPATA5Q8NB90 893 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 ZNF384Q8TF68 577 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 DDX4Q9NQI0 724 aaKnown RBP9.41□□□□□ -0.9
CUX1-219ENST00000606749 HMG20BQ9P0W2 317 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 KCNH4Q9UQ05 1017 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 CENPFP49454 3210 aa9.41□□□□□ -0.9
CUX1-219ENST00000606749 POTEFA5A3E0 1075 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 DDTLA6NHG4 134 aaPredicted RBP9.4□□□□□ -0.9
CUX1-219ENST00000606749 PDHXO00330 501 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 ARID4AP29374 1257 aaPredicted RBP9.4□□□□□ -0.9
CUX1-219ENST00000606749 BTDP43251 543 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 RHBDL3P58872 404 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 MOGSQ13724 837 aa9.4□□□□□ -0.9
CUX1-219ENST00000606749 DIEXFQ68CQ4 756 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms