RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 DZIP1Q86YF9 867 aaKnown RBP12.14□□□□□ -0.47
VRK3-216ENST00000599342 CNKSR2Q8WXI2 1034 aa12.14□□□□□ -0.47
VRK3-216ENST00000599342 ERO1AQ96HE7 468 aa12.14□□□□□ -0.47
VRK3-216ENST00000599342 ZNF341Q9BYN7 854 aa12.14□□□□□ -0.47
VRK3-216ENST00000599342 TRIM17Q9Y577 477 aa12.14□□□□□ -0.47
VRK3-216ENST00000599342 A0A1B0GUL7 405 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 SPDYE5A6NIY4 337 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 WDHD1O75717 1129 aaPredicted RBP12.13□□□□□ -0.47
VRK3-216ENST00000599342 BCAR3O75815 825 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 GNAI2P04899 355 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 ADORA1P30542 326 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 HNRNPUQ00839 825 aaKnown RBP eCLIP12.13□□□□□ -0.47
VRK3-216ENST00000599342 TCP10Q12799 353 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 MVPQ14764 893 aaKnown RBP12.13□□□□□ -0.47
VRK3-216ENST00000599342 CDC42EP5Q6NZY7 148 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 ERO1BQ86YB8 467 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 FAM151AQ8WW52 585 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 CLUAP1Q96AJ1 413 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 MS4A4AQ96JQ5 239 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 PTPN18Q99952 460 aa12.13□□□□□ -0.47
VRK3-216ENST00000599342 TIMM10P62072 90 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 SP3Q02447 781 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 TFCP2Q12800 502 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 RASGRF1Q13972 1273 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 TAF1CQ15572 869 aaPredicted RBP12.12□□□□□ -0.47
VRK3-216ENST00000599342 ZKSCAN2Q63HK3 967 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 MIGA2Q7L4E1 593 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 OTOP1Q7RTM1 612 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 SLF2Q8IX21 1173 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 BRI3BPQ8WY22 251 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 ZKSCAN4Q969J2 545 aaPredicted RBP12.12□□□□□ -0.47
VRK3-216ENST00000599342 XAGE2Q96GT9 111 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 ZFYVE28Q9HCC9 887 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 USP40Q9NVE5 1235 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 ABCF2Q9UG63 623 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 SNCAIPQ9Y6H5 919 aa12.12□□□□□ -0.47
VRK3-216ENST00000599342 PDS5AQ29RF7 1337 aaKnown RBP12.11□□□□□ -0.47
VRK3-216ENST00000599342 ZBTB22O15209 634 aa12.11□□□□□ -0.47
VRK3-216ENST00000599342 CETPP11597 493 aa12.11□□□□□ -0.47
VRK3-216ENST00000599342 NFIAQ12857 509 aa12.11□□□□□ -0.47
VRK3-216ENST00000599342 G3BP1Q13283 466 aaKnown RBP eCLIP12.11□□□□□ -0.47
VRK3-216ENST00000599342 SNAPC2Q13487 334 aa12.11□□□□□ -0.47
VRK3-216ENST00000599342 GORABQ5T7V8 394 aa12.11□□□□□ -0.47
VRK3-216ENST00000599342 SPTY2D1Q68D10 685 aaPredicted RBP12.11□□□□□ -0.47
VRK3-216ENST00000599342 FTSJ3Q8IY81 847 aaKnown RBP12.11□□□□□ -0.47
VRK3-216ENST00000599342 CD99L2Q8TCZ2 262 aa12.11□□□□□ -0.47
VRK3-216ENST00000599342 NEUROD6Q96NK8 337 aa12.11□□□□□ -0.47
VRK3-216ENST00000599342 TNNQ9UQP3 1299 aa12.11□□□□□ -0.47
VRK3-216ENST00000599342 IRF6O14896 467 aa12.1□□□□□ -0.47
VRK3-216ENST00000599342 PPIL2Q13356 520 aa12.1□□□□□ -0.47
VRK3-216ENST00000599342 ARHGEF6Q15052 776 aa12.1□□□□□ -0.47
VRK3-216ENST00000599342 ERICH6Q7L0X2 663 aa12.1□□□□□ -0.47
VRK3-216ENST00000599342 FAM43AQ8N2R8 423 aa12.1□□□□□ -0.47
VRK3-216ENST00000599342 TMEM57Q8N5G2 664 aa12.1□□□□□ -0.47
VRK3-216ENST00000599342 EFCC1Q9HA90 598 aa12.1□□□□□ -0.47
VRK3-216ENST00000599342 ZCCHC17Q9NP64 241 aaKnown RBP12.1□□□□□ -0.47
VRK3-216ENST00000599342 GAKO14976 1311 aa12.1□□□□□ -0.47
VRK3-216ENST00000599342 PNMA6EA0A0J9YXQ4 647 aa12.09□□□□□ -0.47
VRK3-216ENST00000599342 INPP5BP32019 993 aa12.09□□□□□ -0.47
VRK3-216ENST00000599342 PPATQ06203 517 aa12.09□□□□□ -0.47
VRK3-216ENST00000599342 DIEXFQ68CQ4 756 aaKnown RBP12.09□□□□□ -0.47
VRK3-216ENST00000599342 ZSCAN29Q8IWY8 852 aaPredicted RBP12.09□□□□□ -0.47
VRK3-216ENST00000599342 MIER1Q8N108 512 aa12.09□□□□□ -0.47
VRK3-216ENST00000599342 FAM198AQ9UFP1 575 aa12.09□□□□□ -0.47
VRK3-216ENST00000599342 PTPN22Q9Y2R2 807 aa12.09□□□□□ -0.47
VRK3-216ENST00000599342 BTBD19C9JJ37 291 aa12.08□□□□□ -0.48
VRK3-216ENST00000599342 ENTPD3O75355 529 aa12.08□□□□□ -0.48
VRK3-216ENST00000599342 BTDP43251 543 aa12.08□□□□□ -0.48
VRK3-216ENST00000599342 RGS3P49796 1198 aa12.08□□□□□ -0.48
VRK3-216ENST00000599342 OS9Q13438 667 aaPredicted RBP12.08□□□□□ -0.48
VRK3-216ENST00000599342 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.08□□□□□ -0.48
VRK3-216ENST00000599342 IDI2Q9BXS1 227 aa12.08□□□□□ -0.48
VRK3-216ENST00000599342 MROH7-TTC4A0A0A0MT08 1334 aa12.08□□□□□ -0.48
VRK3-216ENST00000599342 TLR2O60603 784 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 ARID4AP29374 1257 aaPredicted RBP12.07□□□□□ -0.48
VRK3-216ENST00000599342 GSTO1P78417 241 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 MECOMQ03112 1051 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 PICALMQ13492 652 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 KIF22Q14807 665 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 NOL9Q5SY16 702 aaKnown RBP12.07□□□□□ -0.48
VRK3-216ENST00000599342 ITPRIPQ8IWB1 547 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 SPATA5Q8NB90 893 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 FAM163AQ96GL9 167 aaPredicted RBP12.07□□□□□ -0.48
VRK3-216ENST00000599342 HMG20BQ9P0W2 317 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 ZNF112Q9UJU3 913 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.07□□□□□ -0.48
VRK3-216ENST00000599342 AK9Q5TCS8 1911 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 MYH2Q9UKX2 1941 aa12.07□□□□□ -0.48
VRK3-216ENST00000599342 UQCRFS1P1P0C7P4 283 aa12.06□□□□□ -0.48
VRK3-216ENST00000599342 ZFPM1Q8IX07 1006 aa12.06□□□□□ -0.48
VRK3-216ENST00000599342 PICK1Q9NRD5 415 aa12.06□□□□□ -0.48
VRK3-216ENST00000599342 RAI14Q9P0K7 980 aa12.06□□□□□ -0.48
VRK3-216ENST00000599342 DOCK2Q92608 1830 aa12.06□□□□□ -0.48
VRK3-216ENST00000599342 RFX7Q2KHR2 1363 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 GPR75-ASB3A0A0A6YYF3 556 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 PDHXO00330 501 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 LDHCP07864 332 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 POLA2Q14181 598 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 CCDC158Q5M9N0 1113 aa12.05□□□□□ -0.48
VRK3-216ENST00000599342 TTC39AQ5SRH9 613 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms