RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 HDAC9Q9UKV0 1011 aa18.44■□□□□ 0.54
UPF1-206ENST00000598471 ZMYM6O95789 1325 aa18.44■□□□□ 0.54
UPF1-206ENST00000598471 GPR75-ASB3A0A0A6YYF3 556 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 BTDP43251 543 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 DYNLL1P63167 89 aaKnown RBP18.43■□□□□ 0.54
UPF1-206ENST00000598471 CXCL9Q07325 125 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 NECTIN1Q15223 517 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 ALX1Q15699 326 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 CREB3L3Q68CJ9 461 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 HHIPL2Q6UWX4 724 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 AGBL3Q8NEM8 1001 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 NAPBQ9H115 298 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 RNF181Q9P0P0 153 aa18.43■□□□□ 0.54
UPF1-206ENST00000598471 ZNF646O15015 1829 aaPredicted RBP18.42■□□□□ 0.54
UPF1-206ENST00000598471 SLC27A2O14975 620 aa18.42■□□□□ 0.54
UPF1-206ENST00000598471 TDO2P48775 406 aa18.42■□□□□ 0.54
UPF1-206ENST00000598471 IMMTQ16891 758 aaKnown RBP18.42■□□□□ 0.54
UPF1-206ENST00000598471 SERPINA10Q9UK55 444 aa18.42■□□□□ 0.54
UPF1-206ENST00000598471 DAGLAQ9Y4D2 1042 aa18.42■□□□□ 0.54
UPF1-206ENST00000598471 MYH2Q9UKX2 1941 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 FZD9O00144 591 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 CRKP46108 304 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 MMP14P50281 582 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 SCNN1DP51172 638 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 KRT32Q14532 448 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 RABEP1Q15276 862 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 GIMAP6Q6P9H5 292 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 IFNL3Q8IZI9 196 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 OGFOD1Q8N543 542 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 KCNB2Q92953 911 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 ATP8A2Q9NTI2 1148 aa18.41■□□□□ 0.54
UPF1-206ENST00000598471 GSG1L2A8MUP6 293 aa18.4■□□□□ 0.54
UPF1-206ENST00000598471 FGAP02671 866 aa18.4■□□□□ 0.54
UPF1-206ENST00000598471 RPS12P25398 132 aaKnown RBP18.4■□□□□ 0.54
UPF1-206ENST00000598471 USP5P45974 858 aa18.4■□□□□ 0.54
UPF1-206ENST00000598471 IL27Q8NEV9 243 aa18.4■□□□□ 0.54
UPF1-206ENST00000598471 IL17RAQ96F46 866 aa18.4■□□□□ 0.54
UPF1-206ENST00000598471 ZDHHC15Q96MV8 337 aa18.4■□□□□ 0.54
UPF1-206ENST00000598471 PALD1Q9ULE6 856 aa18.4■□□□□ 0.54
UPF1-206ENST00000598471 SNX14Q9Y5W7 946 aa18.4■□□□□ 0.54
UPF1-206ENST00000598471 ZNF213O14771 459 aa18.39■□□□□ 0.53
UPF1-206ENST00000598471 FOXP2O15409 715 aa18.39■□□□□ 0.53
UPF1-206ENST00000598471 PRKAB2O43741 272 aa18.39■□□□□ 0.53
UPF1-206ENST00000598471 RBM5P52756 815 aaKnown RBP eCLIP18.39■□□□□ 0.53
UPF1-206ENST00000598471 TEX11Q8IYF3 940 aa18.39■□□□□ 0.53
UPF1-206ENST00000598471 SH3RF3Q8TEJ3 882 aaPredicted RBP18.39■□□□□ 0.53
UPF1-206ENST00000598471 GMLQ99445 158 aa18.39■□□□□ 0.53
UPF1-206ENST00000598471 EPB41L4AQ9HCS5 686 aaPredicted RBP18.39■□□□□ 0.53
UPF1-206ENST00000598471 USP17L8P0C7I0 530 aa18.38■□□□□ 0.53
UPF1-206ENST00000598471 PSMA5P28066 241 aa18.38■□□□□ 0.53
UPF1-206ENST00000598471 TSGA10IPQ3SY00 556 aa18.38■□□□□ 0.53
UPF1-206ENST00000598471 AMOTL1Q8IY63 956 aa18.38■□□□□ 0.53
UPF1-206ENST00000598471 SDR42E1Q8WUS8 393 aa18.38■□□□□ 0.53
UPF1-206ENST00000598471 CYP21A2P08686 494 aa18.37■□□□□ 0.53
UPF1-206ENST00000598471 RASEFQ8IZ41 740 aa18.37■□□□□ 0.53
UPF1-206ENST00000598471 KIF2CQ99661 725 aa18.37■□□□□ 0.53
UPF1-206ENST00000598471 ZBTB12Q9Y330 459 aaPredicted RBP18.37■□□□□ 0.53
UPF1-206ENST00000598471 GJA3Q9Y6H8 435 aa18.37■□□□□ 0.53
UPF1-206ENST00000598471 DICER1Q9UPY3 1922 aaKnown RBP18.37■□□□□ 0.53
UPF1-206ENST00000598471 CFAP100Q494V2 611 aa18.36■□□□□ 0.53
UPF1-206ENST00000598471 JAKMIP1Q96N16 626 aaKnown RBP18.36■□□□□ 0.53
UPF1-206ENST00000598471 TM6SF1Q9BZW5 370 aa18.36■□□□□ 0.53
UPF1-206ENST00000598471 DCP1AQ9NPI6 582 aaPredicted RBP18.36■□□□□ 0.53
UPF1-206ENST00000598471 USP40Q9NVE5 1235 aa18.36■□□□□ 0.53
UPF1-206ENST00000598471 ARPP21Q9UBL0 812 aaPredicted RBP18.36■□□□□ 0.53
UPF1-206ENST00000598471 ST18O60284 1047 aa18.35■□□□□ 0.53
UPF1-206ENST00000598471 RHBDL3P58872 404 aa18.35■□□□□ 0.53
UPF1-206ENST00000598471 DLGAP5Q15398 846 aa18.35■□□□□ 0.53
UPF1-206ENST00000598471 APOBEC3HQ6NTF7 200 aaKnown RBP18.35■□□□□ 0.53
UPF1-206ENST00000598471 ZNF784Q8NCA9 323 aaPredicted RBP18.35■□□□□ 0.53
UPF1-206ENST00000598471 DPF2Q92785 391 aa18.35■□□□□ 0.53
UPF1-206ENST00000598471 ZNF541Q9H0D2 1346 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 SLC3A2P08195 630 aaKnown RBP18.34■□□□□ 0.53
UPF1-206ENST00000598471 HMGB1P09429 215 aaKnown RBP18.34■□□□□ 0.53
UPF1-206ENST00000598471 HAND2P61296 217 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 TRDNQ13061 729 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 BECN1Q14457 450 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 CDC42EP5Q6NZY7 148 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 GPC2Q8N158 579 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 ZNF526Q8TF50 670 aaPredicted RBP18.34■□□□□ 0.53
UPF1-206ENST00000598471 TGFBRAP1Q8WUH2 860 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 MCM9Q9NXL9 1143 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 TMOD2Q9NZR1 351 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 SBF1O95248 1867 aa18.34■□□□□ 0.53
UPF1-206ENST00000598471 LAMA4Q16363 1823 aa18.33■□□□□ 0.53
UPF1-206ENST00000598471 TIAM2Q8IVF5 1701 aa18.33■□□□□ 0.52
UPF1-206ENST00000598471 CASTP20810 708 aaKnown RBP18.33■□□□□ 0.52
UPF1-206ENST00000598471 GMPSP49915 693 aaPredicted RBP18.33■□□□□ 0.52
UPF1-206ENST00000598471 SBK1Q52WX2 424 aa18.33■□□□□ 0.52
UPF1-206ENST00000598471 BLOC1S2Q6QNY1 142 aa18.33■□□□□ 0.52
UPF1-206ENST00000598471 MAPKAPK5Q8IW41 473 aa18.33■□□□□ 0.52
UPF1-206ENST00000598471 MTMR14Q8NCE2 650 aa18.33■□□□□ 0.52
UPF1-206ENST00000598471 RNF41Q9H4P4 317 aaPredicted RBP18.33■□□□□ 0.52
UPF1-206ENST00000598471 CYP46A1Q9Y6A2 500 aa18.33■□□□□ 0.52
UPF1-206ENST00000598471 FLT1P17948 1338 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 ZC3H4Q9UPT8 1303 aaKnown RBP18.32■□□□□ 0.52
UPF1-206ENST00000598471 SPDYE2BA6NHP3 402 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 MINDY4BA8MYZ0 360 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 E7EWF7 191 aa18.32■□□□□ 0.52
UPF1-206ENST00000598471 MYO1BO43795 1136 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms