RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 ZFPM1Q8IX07 1006 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 RBM46Q8TBY0 533 aaKnown RBP12.84□□□□□ -0.35
LIG1-210ENST00000596332 GPATCH3Q96I76 525 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 PUS7LQ9H0K6 701 aaKnown RBP12.84□□□□□ -0.35
LIG1-210ENST00000596332 DDX4Q9NQI0 724 aaKnown RBP12.84□□□□□ -0.35
LIG1-210ENST00000596332 GGA3Q9NZ52 723 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 FAM198AQ9UFP1 575 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 MAST3O60307 1309 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 PASKQ96RG2 1323 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 ZNF532Q9HCE3 1301 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 CLRN2A0PK11 232 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 TRAF5O00463 557 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 SDSP20132 328 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 CYP7A1P22680 504 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 BTDP43251 543 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 MAP3K12Q12852 859 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 UBE3CQ15386 1083 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 NAA16Q6N069 864 aaPredicted RBP12.83□□□□□ -0.36
LIG1-210ENST00000596332 DZIP1Q86YF9 867 aaKnown RBP12.83□□□□□ -0.36
LIG1-210ENST00000596332 CNTROBQ8N137 903 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 OSBP2Q969R2 916 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 TEPSINQ96N21 525 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 SEC62Q99442 399 aaKnown RBP12.83□□□□□ -0.36
LIG1-210ENST00000596332 GLIS2Q9BZE0 524 aaPredicted RBP12.83□□□□□ -0.36
LIG1-210ENST00000596332 MKRN1Q9UHC7 482 aaKnown RBP12.83□□□□□ -0.36
LIG1-210ENST00000596332 PITPNM2Q9BZ72 1349 aa12.83□□□□□ -0.36
LIG1-210ENST00000596332 MYH2Q9UKX2 1941 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 ADM5C9JUS6 153 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 FOXP2O15409 715 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 RNF113AO15541 343 aaKnown RBP12.82□□□□□ -0.36
LIG1-210ENST00000596332 LDHCP07864 332 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 RBM5P52756 815 aaKnown RBP eCLIP12.82□□□□□ -0.36
LIG1-210ENST00000596332 SH3BP5LQ7L8J4 393 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 USP48Q86UV5 1035 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 MIGA1Q8NAN2 632 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 SH3RF3Q8TEJ3 882 aaPredicted RBP12.82□□□□□ -0.36
LIG1-210ENST00000596332 EVI5LQ96CN4 794 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 IDI2Q9BXS1 227 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 IL25Q9H293 177 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 USP40Q9NVE5 1235 aa12.82□□□□□ -0.36
LIG1-210ENST00000596332 ZBTB47Q9UFB7 747 aaPredicted RBP12.82□□□□□ -0.36
LIG1-210ENST00000596332 MAST2Q6P0Q8 1798 aa12.81□□□□□ -0.36
LIG1-210ENST00000596332 POLR2AP24928 1970 aaKnown RBP12.81□□□□□ -0.36
LIG1-210ENST00000596332 GSTO1P78417 241 aa12.81□□□□□ -0.36
LIG1-210ENST00000596332 ZMYM1Q5SVZ6 1142 aa12.81□□□□□ -0.36
LIG1-210ENST00000596332 FKBP1CQ5VVH2 108 aa12.81□□□□□ -0.36
LIG1-210ENST00000596332 PRAMEF18Q5VWM3 479 aa12.81□□□□□ -0.36
LIG1-210ENST00000596332 CST9Q5W186 159 aa12.81□□□□□ -0.36
LIG1-210ENST00000596332 TMED8Q6PL24 325 aaPredicted RBP12.81□□□□□ -0.36
LIG1-210ENST00000596332 AATFQ9NY61 560 aaKnown RBP eCLIP12.81□□□□□ -0.36
LIG1-210ENST00000596332 CLEC11AQ9Y240 323 aa12.81□□□□□ -0.36
LIG1-210ENST00000596332 SSC5DA1L4H1 1573 aa12.81□□□□□ -0.36
LIG1-210ENST00000596332 M0R2C6 588 aa12.8□□□□□ -0.36
LIG1-210ENST00000596332 SLURP2P0DP57 97 aa12.8□□□□□ -0.36
LIG1-210ENST00000596332 CDC37L1Q7L3B6 337 aa12.8□□□□□ -0.36
LIG1-210ENST00000596332 LCORLQ8N3X6 602 aa12.8□□□□□ -0.36
LIG1-210ENST00000596332 FAM227BQ96M60 508 aa12.8□□□□□ -0.36
LIG1-210ENST00000596332 DEFB129Q9H1M3 183 aa12.8□□□□□ -0.36
LIG1-210ENST00000596332 GTF3C3Q9Y5Q9 886 aa12.8□□□□□ -0.36
LIG1-210ENST00000596332 ECM29Q5VYK3 1845 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 TCP10L2B9ZVM9 353 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 PRKAB2O43741 272 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 EVX2Q03828 476 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 FSTL1Q12841 308 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 RASA3Q14644 834 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 KRT26Q7Z3Y9 468 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 TICAM2Q86XR7 235 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 SLF2Q8IX21 1173 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 SMC1BQ8NDV3 1235 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 APPBP2Q92624 585 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 STRBPQ96SI9 672 aaKnown RBP12.79□□□□□ -0.36
LIG1-210ENST00000596332 ARMT1Q9H993 441 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 ATRNL1Q5VV63 1379 aa12.79□□□□□ -0.36
LIG1-210ENST00000596332 A0A0D9SFI3 127 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 DDTLA6NHG4 134 aaPredicted RBP12.78□□□□□ -0.36
LIG1-210ENST00000596332 SMIM22K7EJ46 135 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 RGS3P49796 1198 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 MAP3K10Q02779 954 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 BMP2KLQ5H9B9 411 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 NBPF12Q5TAG4 269 aaPredicted RBP12.78□□□□□ -0.36
LIG1-210ENST00000596332 FAM83AQ86UY5 434 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 FAM151AQ8WW52 585 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 RILPL2Q969X0 211 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 DCPSQ96C86 337 aaKnown RBP12.78□□□□□ -0.36
LIG1-210ENST00000596332 FSD1Q9BTV5 496 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 TMEM39BQ9GZU3 492 aa12.78□□□□□ -0.36
LIG1-210ENST00000596332 MAGEB6P1A0A0J9YX57 407 aa12.77□□□□□ -0.37
LIG1-210ENST00000596332 GSG1L2A8MUP6 293 aa12.77□□□□□ -0.37
LIG1-210ENST00000596332 TRIM6-TRIM34B2RNG4 842 aa12.77□□□□□ -0.37
LIG1-210ENST00000596332 ENTPD3O75355 529 aa12.77□□□□□ -0.37
LIG1-210ENST00000596332 MBD4O95243 580 aa12.77□□□□□ -0.37
LIG1-210ENST00000596332 ZFYP08048 801 aaPredicted RBP12.77□□□□□ -0.37
LIG1-210ENST00000596332 CHMLP26374 656 aa12.77□□□□□ -0.37
LIG1-210ENST00000596332 NMIQ13287 307 aaPredicted RBP12.77□□□□□ -0.37
LIG1-210ENST00000596332 CCDC129Q6ZRS4 1044 aa12.77□□□□□ -0.37
LIG1-210ENST00000596332 ZNF589Q86UQ0 364 aaPredicted RBP12.77□□□□□ -0.37
LIG1-210ENST00000596332 APOBEC3FQ8IUX4 373 aaKnown RBP12.77□□□□□ -0.37
LIG1-210ENST00000596332 CDCA5Q96FF9 252 aa12.77□□□□□ -0.37
LIG1-210ENST00000596332 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.77□□□□□ -0.371e-8■■■■■ 47.8
LIG1-210ENST00000596332 VEZTQ9HBM0 779 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms