RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CLUAP1Q96AJ1 413 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 ARMC5Q96C12 935 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 SIL1Q9H173 461 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 VEZTQ9HBM0 779 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 PCDHAC2Q9Y5I4 1007 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 TRIOBPQ9H2D6 2365 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 F8W031 263 aaPredicted RBP12.95□□□□□ -0.34
LIG3-212ENST00000590181 ZBTB7BO15156 539 aaPredicted RBP12.95□□□□□ -0.34
LIG3-212ENST00000590181 GJA5P36382 358 aa12.95□□□□□ -0.34
LIG3-212ENST00000590181 TMEM57Q8N5G2 664 aa12.95□□□□□ -0.34
LIG3-212ENST00000590181 EFCC1Q9HA90 598 aa12.95□□□□□ -0.34
LIG3-212ENST00000590181 ZNF70Q9UC06 446 aaPredicted RBP12.95□□□□□ -0.34
LIG3-212ENST00000590181 AOX1Q06278 1338 aa12.94□□□□□ -0.34
LIG3-212ENST00000590181 LDHBP07195 334 aaKnown RBP12.94□□□□□ -0.34
LIG3-212ENST00000590181 UQCRFS1P1P0C7P4 283 aa12.94□□□□□ -0.34
LIG3-212ENST00000590181 POLA2Q14181 598 aa12.94□□□□□ -0.34
LIG3-212ENST00000590181 OTUD7BQ6GQQ9 843 aa12.94□□□□□ -0.34
LIG3-212ENST00000590181 ITPRIPQ8IWB1 547 aa12.94□□□□□ -0.34
LIG3-212ENST00000590181 DDX19BQ9UMR2 479 aa12.94□□□□□ -0.34
LIG3-212ENST00000590181 NOP58Q9Y2X3 529 aaKnown RBP12.94□□□□□ -0.34
LIG3-212ENST00000590181 A0A1B0GUL7 405 aa12.93□□□□□ -0.34
LIG3-212ENST00000590181 EN2P19622 333 aaPredicted RBP12.93□□□□□ -0.34
LIG3-212ENST00000590181 FXR1P51114 621 aaKnown RBP eCLIP12.93□□□□□ -0.34
LIG3-212ENST00000590181 SP3Q02447 781 aa12.93□□□□□ -0.34
LIG3-212ENST00000590181 CHAF1AQ13111 956 aaPredicted RBP12.93□□□□□ -0.34
LIG3-212ENST00000590181 RASA3Q14644 834 aa12.93□□□□□ -0.34
LIG3-212ENST00000590181 GORABQ5T7V8 394 aa12.93□□□□□ -0.34
LIG3-212ENST00000590181 CCDC102BQ68D86 513 aa12.93□□□□□ -0.34
LIG3-212ENST00000590181 ERC1Q8IUD2 1116 aa12.93□□□□□ -0.34
LIG3-212ENST00000590181 RPAP2Q8IXW5 612 aaPredicted RBP12.93□□□□□ -0.34
LIG3-212ENST00000590181 FAM163AQ96GL9 167 aaPredicted RBP12.93□□□□□ -0.34
LIG3-212ENST00000590181 ZNF512BQ96KM6 892 aaPredicted RBP12.93□□□□□ -0.34
LIG3-212ENST00000590181 HMMRO75330 724 aa12.92□□□□□ -0.34
LIG3-212ENST00000590181 LDHCP07864 332 aa12.92□□□□□ -0.34
LIG3-212ENST00000590181 CAP1Q01518 475 aa12.92□□□□□ -0.34
LIG3-212ENST00000590181 PDE3AQ14432 1141 aa12.92□□□□□ -0.34
LIG3-212ENST00000590181 NBPF12Q5TAG4 269 aaPredicted RBP12.92□□□□□ -0.34
LIG3-212ENST00000590181 ANKRD13AQ8IZ07 590 aa12.92□□□□□ -0.34
LIG3-212ENST00000590181 XAGE2Q96GT9 111 aa12.92□□□□□ -0.34
LIG3-212ENST00000590181 ZNF333Q96JL9 665 aa12.92□□□□□ -0.34
LIG3-212ENST00000590181 TDRD3Q9H7E2 651 aaKnown RBP12.92□□□□□ -0.34
LIG3-212ENST00000590181 ELP3Q9H9T3 547 aa12.92□□□□□ -0.34
LIG3-212ENST00000590181 PA2G4Q9UQ80 394 aaKnown RBP12.92□□□□□ -0.34
LIG3-212ENST00000590181 JAG2Q9Y219 1238 aa12.92□□□□□ -0.34
LIG3-212ENST00000590181 TIMM10P62072 90 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 GSTO1P78417 241 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 TFCP2Q12800 502 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 SLC9C1Q4G0N8 1177 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 CCDC158Q5M9N0 1113 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 DCAF15Q66K64 600 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 OPTNQ96CV9 577 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 TMEM106CQ9BVX2 250 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 RCAN3Q9UKA8 241 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 IQSEC3Q9UPP2 1182 aaPredicted RBP12.91□□□□□ -0.34
LIG3-212ENST00000590181 RPAP1Q9BWH6 1393 aaPredicted RBP12.91□□□□□ -0.34
LIG3-212ENST00000590181 SZT2Q5T011 3432 aa12.91□□□□□ -0.34
LIG3-212ENST00000590181 RANBP2P49792 3224 aaKnown RBP12.9□□□□□ -0.34
LIG3-212ENST00000590181 PNMA6EA0A0J9YXQ4 647 aa12.9□□□□□ -0.34
LIG3-212ENST00000590181 NPM3O75607 178 aaKnown RBP12.9□□□□□ -0.34
LIG3-212ENST00000590181 ARID4AP29374 1257 aaPredicted RBP12.9□□□□□ -0.34
LIG3-212ENST00000590181 OS9Q13438 667 aaPredicted RBP12.9□□□□□ -0.34
LIG3-212ENST00000590181 TAF1CQ15572 869 aaPredicted RBP12.9□□□□□ -0.34
LIG3-212ENST00000590181 APOBEC3HQ6NTF7 200 aaKnown RBP12.9□□□□□ -0.34
LIG3-212ENST00000590181 CERS3Q8IU89 383 aa12.9□□□□□ -0.34
LIG3-212ENST00000590181 NEUROD6Q96NK8 337 aa12.9□□□□□ -0.34
LIG3-212ENST00000590181 PTPN18Q99952 460 aa12.9□□□□□ -0.34
LIG3-212ENST00000590181 PTCH2Q9Y6C5 1203 aa12.9□□□□□ -0.34
LIG3-212ENST00000590181 CCL15-CCL14A0A0B4J2E2 113 aa12.89□□□□□ -0.35
LIG3-212ENST00000590181 TESPA1A2RU30 521 aaPredicted RBP12.89□□□□□ -0.35
LIG3-212ENST00000590181 USP2O75604 605 aaPredicted RBP12.89□□□□□ -0.35
LIG3-212ENST00000590181 SURF6O75683 361 aaKnown RBP12.89□□□□□ -0.35
LIG3-212ENST00000590181 PHKA1P46020 1223 aa12.89□□□□□ -0.35
LIG3-212ENST00000590181 CCL15Q16663 113 aa12.89□□□□□ -0.35
LIG3-212ENST00000590181 ERICH6Q7L0X2 663 aa12.89□□□□□ -0.35
LIG3-212ENST00000590181 FAM151AQ8WW52 585 aa12.89□□□□□ -0.35
LIG3-212ENST00000590181 COLQQ9Y215 455 aaPredicted RBP12.89□□□□□ -0.35
LIG3-212ENST00000590181 MGAMO43451 1857 aa12.89□□□□□ -0.35
LIG3-212ENST00000590181 MYH2Q9UKX2 1941 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 ENTPD3O75355 529 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 MAP3K9P80192 1104 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 RASGRF1Q13972 1273 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 SLC4A8Q2Y0W8 1093 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 DZIP1Q86YF9 867 aaKnown RBP12.88□□□□□ -0.35
LIG3-212ENST00000590181 CDAN1Q8IWY9 1227 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 SPATA5Q8NB90 893 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 CNKSR2Q8WXI2 1034 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 BRI3BPQ8WY22 251 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 TEPSINQ96N21 525 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 IDI2Q9BXS1 227 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 CSADQ9Y600 493 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 GAKO14976 1311 aa12.88□□□□□ -0.35
LIG3-212ENST00000590181 TCP10L2B9ZVM9 353 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 WDHD1O75717 1129 aaPredicted RBP12.87□□□□□ -0.35
LIG3-212ENST00000590181 MYCP01106 439 aaPredicted RBP12.87□□□□□ -0.35
LIG3-212ENST00000590181 RLBP1P12271 317 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 PLCG2P16885 1265 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 VGLL4Q14135 290 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 ARHGEF6Q15052 776 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 TNNI3KQ59H18 835 aa12.87□□□□□ -0.35
LIG3-212ENST00000590181 NBPF11Q86T75 865 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms