RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 TMOD2Q9NZR1 351 aa24.44■■□□□ 1.5
ATG4D-208ENST00000588667 SCAF8Q9UPN6 1271 aaKnown RBP24.44■■□□□ 1.5
ATG4D-208ENST00000588667 ERC2O15083 957 aa24.43■■□□□ 1.5
ATG4D-208ENST00000588667 MAP3K12Q12852 859 aa24.43■■□□□ 1.5
ATG4D-208ENST00000588667 NAA16Q6N069 864 aaPredicted RBP24.43■■□□□ 1.5
ATG4D-208ENST00000588667 TMED8Q6PL24 325 aaPredicted RBP24.43■■□□□ 1.5
ATG4D-208ENST00000588667 PPP2R3BQ9Y5P8 575 aa24.43■■□□□ 1.5
ATG4D-208ENST00000588667 CDCA5Q96FF9 252 aa24.43■■□□□ 1.5
ATG4D-208ENST00000588667 GPR75-ASB3A0A0A6YYF3 556 aa24.42■■□□□ 1.5
ATG4D-208ENST00000588667 FKBP1CQ5VVH2 108 aa24.42■■□□□ 1.5
ATG4D-208ENST00000588667 CDC42EP5Q6NZY7 148 aa24.42■■□□□ 1.5
ATG4D-208ENST00000588667 DLK2Q6UY11 383 aa24.42■■□□□ 1.5
ATG4D-208ENST00000588667 PI4K2BQ8TCG2 481 aa24.42■■□□□ 1.5
ATG4D-208ENST00000588667 EDC3Q96F86 508 aaKnown RBP24.42■■□□□ 1.5
ATG4D-208ENST00000588667 DEFB129Q9H1M3 183 aa24.42■■□□□ 1.5
ATG4D-208ENST00000588667 GLRX3O76003 335 aaKnown RBP24.41■■□□□ 1.5
ATG4D-208ENST00000588667 BTDP43251 543 aa24.41■■□□□ 1.5
ATG4D-208ENST00000588667 STAP2Q9UGK3 403 aa24.41■■□□□ 1.5
ATG4D-208ENST00000588667 TMEM88BA6NKF7 163 aa24.4■■□□□ 1.5
ATG4D-208ENST00000588667 CELF2O95319 508 aaKnown RBP24.4■■□□□ 1.5
ATG4D-208ENST00000588667 ZNF408Q9H9D4 720 aa24.4■■□□□ 1.5
ATG4D-208ENST00000588667 CREBZFQ9NS37 354 aa24.4■■□□□ 1.5
ATG4D-208ENST00000588667 TNNI2P48788 182 aa24.39■■□□□ 1.5
ATG4D-208ENST00000588667 CACNB3P54284 484 aa24.39■■□□□ 1.5
ATG4D-208ENST00000588667 CST9Q5W186 159 aa24.39■■□□□ 1.5
ATG4D-208ENST00000588667 MAGEB6Q8N7X4 407 aa24.39■■□□□ 1.5
ATG4D-208ENST00000588667 USP40Q9NVE5 1235 aa24.39■■□□□ 1.5
ATG4D-208ENST00000588667 TCP10L2B9ZVM9 353 aa24.39■■□□□ 1.49
ATG4D-208ENST00000588667 PDE4AP27815 886 aa24.39■■□□□ 1.49
ATG4D-208ENST00000588667 PDE1AP54750 535 aa24.39■■□□□ 1.49
ATG4D-208ENST00000588667 RASA3Q14644 834 aa24.39■■□□□ 1.49
ATG4D-208ENST00000588667 TSHZ2Q9NRE2 1034 aa24.39■■□□□ 1.49
ATG4D-208ENST00000588667 CYP7A1P22680 504 aa24.38■■□□□ 1.49
ATG4D-208ENST00000588667 FAM83AQ86UY5 434 aa24.38■■□□□ 1.49
ATG4D-208ENST00000588667 NOL10Q9BSC4 688 aaKnown RBP24.38■■□□□ 1.49
ATG4D-208ENST00000588667 RFX7Q2KHR2 1363 aa24.37■■□□□ 1.49
ATG4D-208ENST00000588667 MAP4K4O95819 1239 aaPredicted RBP24.37■■□□□ 1.49
ATG4D-208ENST00000588667 ADGRA1Q86SQ6 560 aa24.37■■□□□ 1.49
ATG4D-208ENST00000588667 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.37■■□□□ 1.491e-6■■■■■ 36.3
ATG4D-208ENST00000588667 CNTNAP1P78357 1384 aa24.37■■□□□ 1.49
ATG4D-208ENST00000588667 PAPPA2Q9BXP8 1791 aa24.36■■□□□ 1.49
ATG4D-208ENST00000588667 BAG3O95817 575 aa24.36■■□□□ 1.49
ATG4D-208ENST00000588667 PDE6AP16499 860 aa24.36■■□□□ 1.49
ATG4D-208ENST00000588667 RHBDL3P58872 404 aa24.36■■□□□ 1.49
ATG4D-208ENST00000588667 SLC9C2Q5TAH2 1124 aa24.36■■□□□ 1.49
ATG4D-208ENST00000588667 PRAMEF18Q5VWM3 479 aa24.36■■□□□ 1.49
ATG4D-208ENST00000588667 CEP350Q5VT06 3117 aa24.36■■□□□ 1.49
ATG4D-208ENST00000588667 CDK5RAP2Q96SN8 1893 aa24.36■■□□□ 1.49
ATG4D-208ENST00000588667 AK9Q5TCS8 1911 aa24.36■■□□□ 1.49
ATG4D-208ENST00000588667 FOCADQ5VW36 1801 aa24.35■■□□□ 1.49
ATG4D-208ENST00000588667 NF2P35240 595 aa24.35■■□□□ 1.49
ATG4D-208ENST00000588667 IDI2Q9BXS1 227 aa24.35■■□□□ 1.49
ATG4D-208ENST00000588667 RPAP1Q9BWH6 1393 aaPredicted RBP24.35■■□□□ 1.49
ATG4D-208ENST00000588667 PLCG2P16885 1265 aa24.35■■□□□ 1.49
ATG4D-208ENST00000588667 PPP4CP60510 307 aa24.35■■□□□ 1.49
ATG4D-208ENST00000588667 NFIAQ12857 509 aa24.35■■□□□ 1.49
ATG4D-208ENST00000588667 AATFQ9NY61 560 aaKnown RBP eCLIP24.35■■□□□ 1.49
ATG4D-208ENST00000588667 CERS3Q8IU89 383 aa24.34■■□□□ 1.49
ATG4D-208ENST00000588667 PLEKHM2Q8IWE5 1019 aa24.34■■□□□ 1.49
ATG4D-208ENST00000588667 KBTBD3Q8NAB2 608 aa24.34■■□□□ 1.49
ATG4D-208ENST00000588667 TMEM39BQ9GZU3 492 aa24.34■■□□□ 1.49
ATG4D-208ENST00000588667 GBA2Q9HCG7 927 aaPredicted RBP24.34■■□□□ 1.49
ATG4D-208ENST00000588667 WDHD1O75717 1129 aaPredicted RBP24.33■■□□□ 1.49
ATG4D-208ENST00000588667 ADD2P35612 726 aa24.33■■□□□ 1.49
ATG4D-208ENST00000588667 HTRA3P83110 453 aa24.33■■□□□ 1.49
ATG4D-208ENST00000588667 SUPT20HL1Q3ZLR7 823 aa24.33■■□□□ 1.49
ATG4D-208ENST00000588667 ZSCAN25Q6NSZ9 544 aa24.33■■□□□ 1.49
ATG4D-208ENST00000588667 FAM151AQ8WW52 585 aa24.33■■□□□ 1.49
ATG4D-208ENST00000588667 TEPSINQ96N21 525 aa24.33■■□□□ 1.49
ATG4D-208ENST00000588667 OSBPL3Q9H4L5 887 aa24.33■■□□□ 1.49
ATG4D-208ENST00000588667 FAM198AQ9UFP1 575 aa24.33■■□□□ 1.49
ATG4D-208ENST00000588667 SSC5DA1L4H1 1573 aa24.33■■□□□ 1.48
ATG4D-208ENST00000588667 ZNF532Q9HCE3 1301 aa24.33■■□□□ 1.48
ATG4D-208ENST00000588667 TCRBV5S4A2TA0A5A2 114 aa24.32■■□□□ 1.48
ATG4D-208ENST00000588667 FKBP1BP68106 108 aa24.32■■□□□ 1.48
ATG4D-208ENST00000588667 C2orf69Q8N8R5 385 aa24.32■■□□□ 1.48
ATG4D-208ENST00000588667 ABT1Q9ULW3 272 aaKnown RBP24.32■■□□□ 1.48
ATG4D-208ENST00000588667 TLL2Q9Y6L7 1015 aa24.32■■□□□ 1.48
ATG4D-208ENST00000588667 ENTPD3O75355 529 aa24.32■■□□□ 1.48
ATG4D-208ENST00000588667 NBPF12Q5TAG4 269 aaPredicted RBP24.32■■□□□ 1.48
ATG4D-208ENST00000588667 TEX11Q8IYF3 940 aa24.32■■□□□ 1.48
ATG4D-208ENST00000588667 MIGA1Q8NAN2 632 aa24.32■■□□□ 1.48
ATG4D-208ENST00000588667 SH3RF3Q8TEJ3 882 aaPredicted RBP24.32■■□□□ 1.48
ATG4D-208ENST00000588667 NPM3O75607 178 aaKnown RBP24.31■■□□□ 1.48
ATG4D-208ENST00000588667 TCP10Q12799 353 aa24.31■■□□□ 1.48
ATG4D-208ENST00000588667 UBE3CQ15386 1083 aa24.31■■□□□ 1.48
ATG4D-208ENST00000588667 SAPCD2Q86UD0 394 aa24.31■■□□□ 1.48
ATG4D-208ENST00000588667 CDAN1Q8IWY9 1227 aa24.3■■□□□ 1.48
ATG4D-208ENST00000588667 DDX4Q9NQI0 724 aaKnown RBP24.3■■□□□ 1.48
ATG4D-208ENST00000588667 DYNLL1P63167 89 aaKnown RBP24.29■■□□□ 1.48
ATG4D-208ENST00000588667 PICALMQ13492 652 aa24.29■■□□□ 1.48
ATG4D-208ENST00000588667 LRRFIP1Q32MZ4 808 aaKnown RBP24.29■■□□□ 1.48
ATG4D-208ENST00000588667 MAGEB6P1A0A0J9YX57 407 aa24.28■■□□□ 1.48
ATG4D-208ENST00000588667 ZFYP08048 801 aaPredicted RBP24.28■■□□□ 1.48
ATG4D-208ENST00000588667 RIOK1Q9BRS2 568 aaKnown RBP24.28■■□□□ 1.48
ATG4D-208ENST00000588667 BACH2Q9BYV9 841 aa24.28■■□□□ 1.48
ATG4D-208ENST00000588667 COL2A1P02458 1487 aaPredicted RBP24.28■■□□□ 1.48
ATG4D-208ENST00000588667 RASSF10A6NK89 507 aa24.28■■□□□ 1.48
ATG4D-208ENST00000588667 EVI5LQ96CN4 794 aa24.28■■□□□ 1.48
ATG4D-208ENST00000588667 HOOK2Q96ED9 719 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms