RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 CYP7A1P22680 504 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 TDO2P48775 406 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 TGFB2P61812 414 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 CCDC93Q567U6 631 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 CREB3L3Q68CJ9 461 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 BLOC1S2Q6QNY1 142 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 FBXO33Q7Z6M2 555 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 ZNF589Q86UQ0 364 aaPredicted RBP7.36□□□□□ -1.23
LIG3-206ENST00000586058 IFNLR1Q8IU57 520 aaPredicted RBP7.36□□□□□ -1.23
LIG3-206ENST00000586058 TTLL6Q8N841 843 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 TBC1D16Q8TBP0 767 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 MAP4K1Q92918 833 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 CHMP4CQ96CF2 233 aa7.36□□□□□ -1.23
LIG3-206ENST00000586058 FAM84BQ96KN1 310 aaPredicted RBP7.36□□□□□ -1.23
LIG3-206ENST00000586058 JAKMIP1Q96N16 626 aaKnown RBP7.36□□□□□ -1.23
LIG3-206ENST00000586058 PIH1D3Q9NQM4 214 aaKnown RBP7.36□□□□□ -1.23
LIG3-206ENST00000586058 SCN9AQ15858 1988 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 MYH4Q9Y623 1939 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 M0R2C6 588 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 SNAP23O00161 211 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 ZNF213O14771 459 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 SLC27A2O14975 620 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 RIMBP2O15034 1052 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 MBD4O95243 580 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 ZBTB7AO95365 584 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 SLC3A2P08195 630 aaKnown RBP7.35□□□□□ -1.23
LIG3-206ENST00000586058 HSPD1P10809 573 aaKnown RBP7.35□□□□□ -1.23
LIG3-206ENST00000586058 R3HDM1Q15032 1099 aaKnown RBP7.35□□□□□ -1.23
LIG3-206ENST00000586058 CCDC129Q6ZRS4 1044 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 RTKN2Q8IZC4 609 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 UPF1Q92900 1129 aaKnown RBP eCLIP7.35□□□□□ -1.23
LIG3-206ENST00000586058 CRNKL1Q9BZJ0 848 aaKnown RBP7.35□□□□□ -1.23
LIG3-206ENST00000586058 TM6SF1Q9BZW5 370 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 CD209Q9NNX6 404 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 PIM2Q9P1W9 311 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 PPP1R1BQ9UD71 204 aaPredicted RBP7.35□□□□□ -1.23
LIG3-206ENST00000586058 WWC3Q9ULE0 1092 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 SNX14Q9Y5W7 946 aa7.35□□□□□ -1.23
LIG3-206ENST00000586058 IL1R1P14778 569 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 KLRK1P26718 216 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 CHRNA5P30532 468 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 PSEN1P49768 467 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 PTH1RQ03431 593 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 NECTIN1Q15223 517 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 MFSD14BQ5SR56 506 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 RUFY3Q7L099 469 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 TDRD7Q8NHU6 1098 aaKnown RBP7.34□□□□□ -1.23
LIG3-206ENST00000586058 OSBP2Q969R2 916 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 NEK1Q96PY6 1258 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 SEC62Q99442 399 aaKnown RBP7.34□□□□□ -1.23
LIG3-206ENST00000586058 TBC1D2Q9BYX2 928 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 RNF41Q9H4P4 317 aaPredicted RBP7.34□□□□□ -1.23
LIG3-206ENST00000586058 CNNM2Q9H8M5 875 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 PDRG1Q9NUG6 133 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 SUGT1Q9Y2Z0 365 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 SLC4A4Q9Y6R1 1079 aa7.34□□□□□ -1.23
LIG3-206ENST00000586058 MYO3BQ8WXR4 1341 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 SBF1O95248 1867 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 ERICH2A1L162 156 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 PPIP5K2O43314 1243 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 USP5P45974 858 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 MECOMQ03112 1051 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 SART3Q15020 963 aaKnown RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 DALRD3Q5D0E6 543 aaKnown RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 VPS53Q5VIR6 699 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 NOL8Q76FK4 1167 aaKnown RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 PODNQ7Z5L7 613 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 CDAN1Q8IWY9 1227 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 NCOA7Q8NI08 942 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 IL17RAQ96F46 866 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 ZSCAN31Q96LW9 406 aaPredicted RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 UPF3BQ9BZI7 483 aaKnown RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 PUS7LQ9H0K6 701 aaKnown RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 VPS33BQ9H267 617 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 IL25Q9H293 177 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 SLKQ9H2G2 1235 aaPredicted RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 ARMT1Q9H993 441 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 SH2B1Q9NRF2 756 aaPredicted RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 TOMM22Q9NS69 142 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 ARPP21Q9UBL0 812 aaPredicted RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 POLLQ9UGP5 575 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 PALD1Q9ULE6 856 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.33□□□□□ -1.24
LIG3-206ENST00000586058 CD2APQ9Y5K6 639 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 ATAD5Q96QE3 1844 aa7.33□□□□□ -1.24
LIG3-206ENST00000586058 MROH7-TTC4A0A0A0MT08 1334 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 FAM205AQ6ZU69 1335 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 TCRBV5S4A2TA0A5A2 114 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 PSDA5PKW4 1024 aaPredicted RBP7.32□□□□□ -1.24
LIG3-206ENST00000586058 PATL2C9JE40 543 aaKnown RBP7.32□□□□□ -1.24
LIG3-206ENST00000586058 C21orf2O43822 256 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 ECE2O60344 883 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 RPS6KB1P23443 525 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 PRDX5P30044 214 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 NT5C2P49902 561 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 GTF2IP78347 998 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 MKRN3Q13064 507 aaKnown RBP7.32□□□□□ -1.24
LIG3-206ENST00000586058 TSGA10IPQ3SY00 556 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 GIMAP6Q6P9H5 292 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 NIM1KQ8IY84 436 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms