RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 GOLIM4O00461 696 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 KIAA2012Q0VF49 1180 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 TTF1Q15361 905 aaPredicted RBP11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 TYW1BQ6NUM6 668 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 PI16Q6UXB8 463 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 GPR101Q96P66 508 aaPredicted RBP11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 DNAJC2Q99543 621 aaKnown RBP11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 EPAS1Q99814 870 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 FHDC1Q9C0D6 1143 aaPredicted RBP11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 COA1Q9GZY4 146 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 CD209Q9NNX6 404 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 SNRKQ9NRH2 765 aa11.95□□□□□ -0.5
SMCHD1-212ENST00000585229 DICER1Q9UPY3 1922 aaKnown RBP11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 FAM205AQ6ZU69 1335 aa11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 RAD50Q92878 1312 aa11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 FKBP4Q02790 459 aaKnown RBP eCLIP11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 WASHC4Q2M389 1173 aa11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 TMED8Q6PL24 325 aaPredicted RBP11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 VPS37DQ86XT2 251 aa11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 FSD1Q9BTV5 496 aa11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 ZC3H12CQ9C0D7 883 aaKnown RBP11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 ANTXR1Q9H6X2 564 aa11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 PIH1D3Q9NQM4 214 aaKnown RBP11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 PPP1R1BQ9UD71 204 aaPredicted RBP11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 COL4A5P29400 1685 aa11.94□□□□□ -0.5
SMCHD1-212ENST00000585229 EIF5BO60841 1220 aaKnown RBP11.93□□□□□ -0.5
SMCHD1-212ENST00000585229 ZFYP08048 801 aaPredicted RBP11.93□□□□□ -0.5
SMCHD1-212ENST00000585229 SBF1O95248 1867 aa11.92□□□□□ -0.5
SMCHD1-212ENST00000585229 NFKBIEO00221 500 aa11.92□□□□□ -0.5
SMCHD1-212ENST00000585229 LRRFIP1Q32MZ4 808 aaKnown RBP11.92□□□□□ -0.5
SMCHD1-212ENST00000585229 CASC1Q6TDU7 716 aa11.92□□□□□ -0.5
SMCHD1-212ENST00000585229 PODNQ7Z5L7 613 aa11.92□□□□□ -0.5
SMCHD1-212ENST00000585229 WDR66Q8TBY9 1149 aa11.92□□□□□ -0.5
SMCHD1-212ENST00000585229 FBXW7Q969H0 707 aa11.92□□□□□ -0.5
SMCHD1-212ENST00000585229 ESYT1Q9BSJ8 1104 aa11.92□□□□□ -0.5
SMCHD1-212ENST00000585229 SYT17Q9BSW7 474 aa11.92□□□□□ -0.5
SMCHD1-212ENST00000585229 RNF113AO15541 343 aaKnown RBP11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 SGSM2O43147 1006 aa11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 EPB41L2O43491 1005 aaKnown RBP11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 ADD2P35612 726 aa11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 FKBP1AP62942 108 aaKnown RBP11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 UBE3CQ15386 1083 aa11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 ZMYM1Q5SVZ6 1142 aa11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 ZSCAN25Q6NSZ9 544 aa11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 ZGPATQ8N5A5 531 aaKnown RBP11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 RUFY2Q8WXA3 655 aa11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 KRTAP3-3Q9BYR6 98 aa11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 KRTAP3-2Q9BYR7 98 aa11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 DIAPH3Q9NSV4 1193 aa11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 IQSEC3Q9UPP2 1182 aaPredicted RBP11.91□□□□□ -0.5
SMCHD1-212ENST00000585229 A0A0D9SFI3 127 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 TCRBV5S4A2TA0A5A2 114 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 ECE2O60344 883 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 NMIQ13287 307 aaPredicted RBP11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 AOC3Q16853 763 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 TSR1Q2NL82 804 aaKnown RBP11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 CDAN1Q8IWY9 1227 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 TBC1D22AQ8WUA7 517 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 IL25Q9H293 177 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 TAOK3Q9H2K8 898 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 CDHR5Q9HBB8 845 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 HELLSQ9NRZ9 838 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 BCS1LQ9Y276 419 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 SUGT1Q9Y2Z0 365 aa11.9□□□□□ -0.5
SMCHD1-212ENST00000585229 MYH2Q9UKX2 1941 aa11.9□□□□□ -0.51
SMCHD1-212ENST00000585229 TULP1O00294 542 aaPredicted RBP11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 PPIP5K2O43314 1243 aa11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 FRAT2O75474 233 aaPredicted RBP11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 PDE6AP16499 860 aa11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 IARSP41252 1262 aaKnown RBP11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 PSEN2P49810 448 aa11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 MAP3K12Q12852 859 aa11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 SPTY2D1Q68D10 685 aaPredicted RBP11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 APPBP2Q92624 585 aa11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 FAM227BQ96M60 508 aa11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 WWC3Q9ULE0 1092 aa11.89□□□□□ -0.51
SMCHD1-212ENST00000585229 MAST3O60307 1309 aa11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 IDH1O75874 414 aaKnown RBP11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 CHGBP05060 677 aa11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 CHAF1AQ13111 956 aaPredicted RBP11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 MCMDC2Q4G0Z9 681 aa11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 RBM26Q5T8P6 1007 aaKnown RBP11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 STRIP1Q5VSL9 837 aa11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 CWC27Q6UX04 472 aaKnown RBP11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 ERICH6Q7L0X2 663 aa11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 ZNF384Q8TF68 577 aa11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 OSBP2Q969R2 916 aa11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 NSUN4Q96CB9 384 aaKnown RBP11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 DBNDD1Q9H9R9 158 aa11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 ZNF277Q9NRM2 450 aaPredicted RBP11.88□□□□□ -0.51
SMCHD1-212ENST00000585229 ZNF532Q9HCE3 1301 aa11.87□□□□□ -0.51
SMCHD1-212ENST00000585229 TIAM2Q8IVF5 1701 aa11.87□□□□□ -0.51
SMCHD1-212ENST00000585229 YDJCA8MPS7 323 aa11.87□□□□□ -0.51
SMCHD1-212ENST00000585229 REC8O95072 547 aa11.87□□□□□ -0.51
SMCHD1-212ENST00000585229 PRDX5P30044 214 aa11.87□□□□□ -0.51
SMCHD1-212ENST00000585229 SLC9C2Q5TAH2 1124 aa11.87□□□□□ -0.51
SMCHD1-212ENST00000585229 KCNK17Q96T54 332 aa11.87□□□□□ -0.51
SMCHD1-212ENST00000585229 LRP2BPQ9P2M1 347 aa11.87□□□□□ -0.51
SMCHD1-212ENST00000585229 LAMA4Q16363 1823 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms