RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CEACAM5P06731 702 aa7.21□□□□□ -1.26
SMCHD1-209ENST00000583441 C1orf127Q8N9H9 656 aa7.21□□□□□ -1.26
SMCHD1-209ENST00000583441 ASAP3Q8TDY4 903 aa7.21□□□□□ -1.26
SMCHD1-209ENST00000583441 POM121Q96HA1 1249 aa7.21□□□□□ -1.26
SMCHD1-209ENST00000583441 KIRREL1Q96J84 757 aa7.21□□□□□ -1.26
SMCHD1-209ENST00000583441 OSMRQ99650 979 aa7.21□□□□□ -1.26
SMCHD1-209ENST00000583441 TMPRSS5Q9H3S3 457 aa7.21□□□□□ -1.26
SMCHD1-209ENST00000583441 NSUN3Q9H649 340 aaKnown RBP7.21□□□□□ -1.26
SMCHD1-209ENST00000583441 ZP2Q05996 745 aa7.2□□□□□ -1.26
SMCHD1-209ENST00000583441 CDK5R2Q13319 367 aa7.2□□□□□ -1.26
SMCHD1-209ENST00000583441 KANK4Q5T7N3 995 aaPredicted RBP7.2□□□□□ -1.26
SMCHD1-209ENST00000583441 GGNQ86UU5 652 aa7.2□□□□□ -1.26
SMCHD1-209ENST00000583441 GSX1Q9H4S2 264 aaPredicted RBP7.2□□□□□ -1.26
SMCHD1-209ENST00000583441 ZCCHC4Q9H5U6 513 aa7.2□□□□□ -1.26
SMCHD1-209ENST00000583441 MAOBP27338 520 aa7.19□□□□□ -1.26
SMCHD1-209ENST00000583441 IKZF1Q13422 519 aa7.19□□□□□ -1.26
SMCHD1-209ENST00000583441 PMEPA1Q969W9 287 aa7.19□□□□□ -1.26
SMCHD1-209ENST00000583441 ZFYVE1Q9HBF4 777 aa7.19□□□□□ -1.26
SMCHD1-209ENST00000583441 U3KQE9 123 aa7.19□□□□□ -1.26
SMCHD1-209ENST00000583441 CYP11A1P05108 521 aa7.18□□□□□ -1.26
SMCHD1-209ENST00000583441 OXCT1P55809 520 aa7.18□□□□□ -1.26
SMCHD1-209ENST00000583441 NRSN2Q9GZP1 204 aa7.18□□□□□ -1.26
SMCHD1-209ENST00000583441 PLAGL2Q9UPG8 496 aa7.18□□□□□ -1.26
SMCHD1-209ENST00000583441 TNFRSF10BO14763 440 aa7.17□□□□□ -1.26
SMCHD1-209ENST00000583441 POU4F3Q15319 338 aa7.17□□□□□ -1.26
SMCHD1-209ENST00000583441 CYFIP1Q7L576 1253 aa7.17□□□□□ -1.26
SMCHD1-209ENST00000583441 PROSER2Q86WR7 435 aaPredicted RBP7.17□□□□□ -1.26
SMCHD1-209ENST00000583441 ASB11Q8WXH4 323 aa7.17□□□□□ -1.26
SMCHD1-209ENST00000583441 BORCS6Q96GS4 357 aa7.17□□□□□ -1.26
SMCHD1-209ENST00000583441 ZKSCAN3Q9BRR0 538 aa7.17□□□□□ -1.26
SMCHD1-209ENST00000583441 VRTNQ9H8Y1 702 aa7.17□□□□□ -1.26
SMCHD1-209ENST00000583441 SMG5Q9UPR3 1016 aaKnown RBP7.17□□□□□ -1.26
SMCHD1-209ENST00000583441 BMP7P18075 431 aa7.16□□□□□ -1.26
SMCHD1-209ENST00000583441 KRTAP1-1Q07627 177 aa7.16□□□□□ -1.26
SMCHD1-209ENST00000583441 FAM200AQ8TCP9 573 aa7.16□□□□□ -1.26
SMCHD1-209ENST00000583441 NUDT16Q96DE0 195 aaKnown RBP7.16□□□□□ -1.26
SMCHD1-209ENST00000583441 SNX11Q9Y5W9 270 aa7.16□□□□□ -1.26
SMCHD1-209ENST00000583441 A0A0G2JLL6 359 aaPredicted RBP7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 CTSBP07858 339 aa7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 MED14OSP0DP75 135 aa7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 ITIH2P19823 946 aa7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 PRRT2Q7Z6L0 340 aaPredicted RBP7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 HOMEZQ8IX15 550 aa7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 CLUAP1Q96AJ1 413 aa7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 PRIMPOLQ96LW4 560 aa7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 IRF2BPLQ9H1B7 796 aa7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 DCP1AQ9NPI6 582 aaPredicted RBP7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 PITPNM2Q9BZ72 1349 aa7.15□□□□□ -1.26
SMCHD1-209ENST00000583441 LINC00310P59036 64 aa7.14□□□□□ -1.27
SMCHD1-209ENST00000583441 NFIXQ14938 502 aa7.14□□□□□ -1.27
SMCHD1-209ENST00000583441 EPB41L4BQ9H329 900 aa7.14□□□□□ -1.27
SMCHD1-209ENST00000583441 ETV2O00321 342 aaPredicted RBP7.13□□□□□ -1.27
SMCHD1-209ENST00000583441 RPLP1P05386 114 aaKnown RBP7.13□□□□□ -1.27
SMCHD1-209ENST00000583441 GLDCP23378 1020 aa7.13□□□□□ -1.27
SMCHD1-209ENST00000583441 ABTB2Q8N961 1025 aa7.13□□□□□ -1.27
SMCHD1-209ENST00000583441 ZBTB39O15060 712 aa7.12□□□□□ -1.27
SMCHD1-209ENST00000583441 XKR5Q6UX68 686 aa7.12□□□□□ -1.27
SMCHD1-209ENST00000583441 KCNN1Q92952 543 aa7.12□□□□□ -1.27
SMCHD1-209ENST00000583441 CORO1BQ9BR76 489 aa7.12□□□□□ -1.27
SMCHD1-209ENST00000583441 BHLHE41Q9C0J9 482 aaPredicted RBP7.12□□□□□ -1.27
SMCHD1-209ENST00000583441 KCNK12Q9HB15 430 aa7.12□□□□□ -1.27
SMCHD1-209ENST00000583441 PIDD1Q9HB75 910 aa7.12□□□□□ -1.27
SMCHD1-209ENST00000583441 STIM2Q9P246 746 aa7.12□□□□□ -1.27
SMCHD1-209ENST00000583441 AOC2O75106 756 aa7.11□□□□□ -1.27
SMCHD1-209ENST00000583441 LEFTY1O75610 366 aa7.11□□□□□ -1.27
SMCHD1-209ENST00000583441 NAA30Q147X3 362 aaPredicted RBP7.11□□□□□ -1.27
SMCHD1-209ENST00000583441 TTC16Q8NEE8 873 aa7.11□□□□□ -1.27
SMCHD1-209ENST00000583441 TNKS2Q9H2K2 1166 aa7.11□□□□□ -1.27
SMCHD1-209ENST00000583441 EDN3P14138 238 aa7.1□□□□□ -1.27
SMCHD1-209ENST00000583441 KRTAP10-2P60368 255 aa7.1□□□□□ -1.27
SMCHD1-209ENST00000583441 FNBP4Q8N3X1 1017 aaPredicted RBP7.1□□□□□ -1.27
SMCHD1-209ENST00000583441 CNTNAP4Q9C0A0 1308 aa7.09□□□□□ -1.27
SMCHD1-209ENST00000583441 PRMT3O60678 531 aa7.09□□□□□ -1.27
SMCHD1-209ENST00000583441 PCDH1Q08174 1060 aa7.09□□□□□ -1.27
SMCHD1-209ENST00000583441 DUSP23Q9BVJ7 150 aa7.09□□□□□ -1.27
SMCHD1-209ENST00000583441 CHRDQ9H2X0 955 aa7.09□□□□□ -1.27
SMCHD1-209ENST00000583441 PPP1R9AQ9ULJ8 1098 aa7.09□□□□□ -1.27
SMCHD1-209ENST00000583441 PCSK2P16519 638 aa7.08□□□□□ -1.28
SMCHD1-209ENST00000583441 PDE3AQ14432 1141 aa7.08□□□□□ -1.28
SMCHD1-209ENST00000583441 MKNK1Q9BUB5 465 aa7.08□□□□□ -1.28
SMCHD1-209ENST00000583441 ADRB1P08588 477 aa7.07□□□□□ -1.28
SMCHD1-209ENST00000583441 NFKB2Q00653 900 aa7.07□□□□□ -1.28
SMCHD1-209ENST00000583441 SMYD4Q8IYR2 804 aaPredicted RBP7.07□□□□□ -1.28
SMCHD1-209ENST00000583441 CXorf38Q8TB03 319 aa7.07□□□□□ -1.28
SMCHD1-209ENST00000583441 DDX54Q8TDD1 881 aaKnown RBP7.07□□□□□ -1.28
SMCHD1-209ENST00000583441 GLMNQ92990 594 aa7.07□□□□□ -1.28
SMCHD1-209ENST00000583441 SLC26A8Q96RN1 970 aa7.07□□□□□ -1.28
SMCHD1-209ENST00000583441 WDR18Q9BV38 432 aa7.07□□□□□ -1.28
SMCHD1-209ENST00000583441 PPP1R12CQ9BZL4 782 aa7.07□□□□□ -1.28
SMCHD1-209ENST00000583441 ARID3CA6NKF2 412 aa7.06□□□□□ -1.28
SMCHD1-209ENST00000583441 ECEL1O95672 775 aa7.06□□□□□ -1.28
SMCHD1-209ENST00000583441 LMOD1P29536 600 aaPredicted RBP7.06□□□□□ -1.28
SMCHD1-209ENST00000583441 ZNF423Q2M1K9 1284 aa7.06□□□□□ -1.28
SMCHD1-209ENST00000583441 SKOR2Q2VWA4 1001 aaPredicted RBP7.06□□□□□ -1.28
SMCHD1-209ENST00000583441 C8orf34Q49A92 452 aa7.06□□□□□ -1.28
SMCHD1-209ENST00000583441 CLEC4MQ9H2X3 399 aaPredicted RBP7.06□□□□□ -1.28
SMCHD1-209ENST00000583441 ATXN3LQ9H3M9 355 aa7.06□□□□□ -1.28
SMCHD1-209ENST00000583441 C1orf115Q9H7X2 142 aa7.06□□□□□ -1.28
SMCHD1-209ENST00000583441 SYNGAP1Q96PV0 1343 aa7.05□□□□□ -1.28
SMCHD1-209ENST00000583441 METTL12A8MUP2 240 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms