RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 DZIP1LQ8IYY4 767 aaKnown RBP21.1■□□□□ 0.97
VPS53-218ENST00000575207 LRFN3Q9BTN0 628 aa21.1■□□□□ 0.97
VPS53-218ENST00000575207 JARID2Q92833 1246 aaPredicted RBP21.09■□□□□ 0.97
VPS53-218ENST00000575207 COA7Q96BR5 231 aa21.09■□□□□ 0.97
VPS53-218ENST00000575207 GREM2Q9H772 168 aa21.09■□□□□ 0.97
VPS53-218ENST00000575207 DBF4Q9UBU7 674 aaPredicted RBP21.09■□□□□ 0.97
VPS53-218ENST00000575207 PLEKHF1Q96S99 279 aa21.08■□□□□ 0.97
VPS53-218ENST00000575207 HOOK2Q96ED9 719 aa21.07■□□□□ 0.96
VPS53-218ENST00000575207 HYPKQ9NX55 129 aa21.07■□□□□ 0.96
VPS53-218ENST00000575207 THEGQ9P2T0 379 aa21.07■□□□□ 0.96
VPS53-218ENST00000575207 SPEF2Q9C093 1822 aa21.06■□□□□ 0.96
VPS53-218ENST00000575207 MRPS5P82675 430 aaKnown RBP21.06■□□□□ 0.96
VPS53-218ENST00000575207 TRIM32Q13049 653 aa21.06■□□□□ 0.96
VPS53-218ENST00000575207 C9orf50Q5SZB4 431 aa21.06■□□□□ 0.96
VPS53-218ENST00000575207 CWC25Q9NXE8 425 aaPredicted RBP21.06■□□□□ 0.96
VPS53-218ENST00000575207 CXCL11O14625 94 aa21.05■□□□□ 0.96
VPS53-218ENST00000575207 INPP5BP32019 993 aa21.05■□□□□ 0.96
VPS53-218ENST00000575207 IGHMBP2P38935 993 aaKnown RBP21.05■□□□□ 0.96
VPS53-218ENST00000575207 KCNJ4P48050 445 aa21.05■□□□□ 0.96
VPS53-218ENST00000575207 GRIN2CQ14957 1233 aa21.05■□□□□ 0.96
VPS53-218ENST00000575207 KRT24Q2M2I5 525 aa21.05■□□□□ 0.96
VPS53-218ENST00000575207 HDGFL1Q5TGJ6 251 aa21.05■□□□□ 0.96
VPS53-218ENST00000575207 RIC3Q7Z5B4 369 aa21.05■□□□□ 0.96
VPS53-218ENST00000575207 MAP3K21Q5TCX8 1036 aa21.04■□□□□ 0.96
VPS53-218ENST00000575207 DCAF15Q66K64 600 aa21.04■□□□□ 0.96
VPS53-218ENST00000575207 MYD88Q99836 296 aa21.04■□□□□ 0.96
VPS53-218ENST00000575207 ZNF341Q9BYN7 854 aa21.04■□□□□ 0.96
VPS53-218ENST00000575207 TTF2Q9UNY4 1162 aaKnown RBP21.04■□□□□ 0.96
VPS53-218ENST00000575207 JAG2Q9Y219 1238 aa21.04■□□□□ 0.96
VPS53-218ENST00000575207 SLC45A1Q9Y2W3 748 aa21.04■□□□□ 0.96
VPS53-218ENST00000575207 ZNF804AQ7Z570 1209 aa21.02■□□□□ 0.96
VPS53-218ENST00000575207 FAM83AQ86UY5 434 aa21.02■□□□□ 0.96
VPS53-218ENST00000575207 P2RX7Q99572 595 aaKnown RBP21.02■□□□□ 0.96
VPS53-218ENST00000575207 ZNF112Q9UJU3 913 aa21.02■□□□□ 0.96
VPS53-218ENST00000575207 XIRP2A4UGR9 3374 aa21.02■□□□□ 0.96
VPS53-218ENST00000575207 SNAP23O00161 211 aa21.01■□□□□ 0.95
VPS53-218ENST00000575207 HOXB7P09629 217 aa21.01■□□□□ 0.95
VPS53-218ENST00000575207 CHRNDQ07001 517 aa21.01■□□□□ 0.95
VPS53-218ENST00000575207 FASTKD5Q7L8L6 764 aaKnown RBP21.01■□□□□ 0.95
VPS53-218ENST00000575207 GJD2Q9UKL4 321 aa21.01■□□□□ 0.95
VPS53-218ENST00000575207 LTBP2Q14767 1821 aa21■□□□□ 0.95
VPS53-218ENST00000575207 CRKP46108 304 aa21■□□□□ 0.95
VPS53-218ENST00000575207 GOLGA2Q08379 1002 aa21■□□□□ 0.95
VPS53-218ENST00000575207 PRKAG2Q9UGJ0 569 aa21■□□□□ 0.95
VPS53-218ENST00000575207 MFSD14BQ5SR56 506 aa20.99■□□□□ 0.95
VPS53-218ENST00000575207 NOL9Q5SY16 702 aaKnown RBP20.99■□□□□ 0.95
VPS53-218ENST00000575207 AKNAD1Q5T1N1 836 aa20.99■□□□□ 0.95
VPS53-218ENST00000575207 IL27Q8NEV9 243 aa20.99■□□□□ 0.95
VPS53-218ENST00000575207 RPAP1Q9BWH6 1393 aaPredicted RBP20.98■□□□□ 0.95
VPS53-218ENST00000575207 MAST2Q6P0Q8 1798 aa20.98■□□□□ 0.95
VPS53-218ENST00000575207 A0A0G2JLL6 359 aaPredicted RBP20.98■□□□□ 0.95
VPS53-218ENST00000575207 CACNB3P54284 484 aa20.98■□□□□ 0.95
VPS53-218ENST00000575207 FAM110CQ1W6H9 321 aa20.98■□□□□ 0.95
VPS53-218ENST00000575207 FKBP1CQ5VVH2 108 aa20.98■□□□□ 0.95
VPS53-218ENST00000575207 LHX8Q68G74 356 aa20.98■□□□□ 0.95
VPS53-218ENST00000575207 MIGA2Q7L4E1 593 aa20.98■□□□□ 0.95
VPS53-218ENST00000575207 PRRT2Q7Z6L0 340 aaPredicted RBP20.98■□□□□ 0.95
VPS53-218ENST00000575207 SMCR8Q8TEV9 937 aaPredicted RBP20.98■□□□□ 0.95
VPS53-218ENST00000575207 TRIB2Q92519 343 aa20.98■□□□□ 0.95
VPS53-218ENST00000575207 MPHOSPH8Q99549 860 aa20.98■□□□□ 0.95
VPS53-218ENST00000575207 PPP2R1AP30153 589 aa20.97■□□□□ 0.95
VPS53-218ENST00000575207 TMEM31Q5JXX7 168 aa20.97■□□□□ 0.95
VPS53-218ENST00000575207 ANKRD13CQ8N6S4 541 aa20.97■□□□□ 0.95
VPS53-218ENST00000575207 NECAB3Q96P71 396 aaPredicted RBP20.97■□□□□ 0.95
VPS53-218ENST00000575207 EPHX3Q9H6B9 360 aa20.97■□□□□ 0.95
VPS53-218ENST00000575207 MYH3P11055 1940 aa20.97■□□□□ 0.95
VPS53-218ENST00000575207 PRKAR2AP13861 404 aaKnown RBP20.96■□□□□ 0.95
VPS53-218ENST00000575207 MRE11P49959 708 aa20.96■□□□□ 0.95
VPS53-218ENST00000575207 POTEEQ6S8J3 1075 aa20.96■□□□□ 0.95
VPS53-218ENST00000575207 CHL1O00533 1208 aa20.95■□□□□ 0.94
VPS53-218ENST00000575207 PPM1EQ8WY54 764 aa20.95■□□□□ 0.94
VPS53-218ENST00000575207 BMP1P13497 986 aa20.94■□□□□ 0.94
VPS53-218ENST00000575207 ITGA6P23229 1130 aa20.94■□□□□ 0.94
VPS53-218ENST00000575207 HDLBPQ00341 1268 aaKnown RBP20.94■□□□□ 0.94
VPS53-218ENST00000575207 PDE3AQ14432 1141 aa20.94■□□□□ 0.94
VPS53-218ENST00000575207 METTL22Q9BUU2 404 aaPredicted RBP20.94■□□□□ 0.94
VPS53-218ENST00000575207 TAF5LO75529 589 aa20.93■□□□□ 0.94
VPS53-218ENST00000575207 SENP6Q9GZR1 1112 aaPredicted RBP20.93■□□□□ 0.94
VPS53-218ENST00000575207 ZNF576Q9H609 170 aa20.93■□□□□ 0.94
VPS53-218ENST00000575207 GPR37L1O60883 481 aa20.92■□□□□ 0.94
VPS53-218ENST00000575207 PHAXQ9H814 394 aaKnown RBP20.92■□□□□ 0.94
VPS53-218ENST00000575207 TMOD2Q9NZR1 351 aa20.92■□□□□ 0.94
VPS53-218ENST00000575207 MYO9BQ13459 2157 aa20.92■□□□□ 0.94
VPS53-218ENST00000575207 DNAJB2P25686 324 aa20.91■□□□□ 0.94
VPS53-218ENST00000575207 TDRD7Q8NHU6 1098 aaKnown RBP20.91■□□□□ 0.94
VPS53-218ENST00000575207 BADQ92934 168 aa20.91■□□□□ 0.94
VPS53-218ENST00000575207 GAS2L1Q99501 681 aaPredicted RBP20.91■□□□□ 0.94
VPS53-218ENST00000575207 MAPK8IP3Q9UPT6 1336 aa20.91■□□□□ 0.94
VPS53-218ENST00000575207 TCF20Q9UGU0 1960 aaKnown RBP20.9■□□□□ 0.94
VPS53-218ENST00000575207 RIPK4P57078 832 aa20.9■□□□□ 0.94
VPS53-218ENST00000575207 GADL1Q6ZQY3 521 aa20.9■□□□□ 0.94
VPS53-218ENST00000575207 CHD9Q3L8U1 2897 aa20.89■□□□□ 0.94
VPS53-218ENST00000575207 XRCC5P13010 732 aaKnown RBP20.89■□□□□ 0.93
VPS53-218ENST00000575207 RTP1P59025 263 aa20.89■□□□□ 0.93
VPS53-218ENST00000575207 CACNB2Q08289 660 aaPredicted RBP20.89■□□□□ 0.93
VPS53-218ENST00000575207 PNNQ9H307 717 aaKnown RBP20.89■□□□□ 0.93
VPS53-218ENST00000575207 C11orf16Q9NQ32 467 aa20.89■□□□□ 0.93
VPS53-218ENST00000575207 AFG3L2Q9Y4W6 797 aa20.89■□□□□ 0.93
VPS53-218ENST00000575207 ZHX2Q9Y6X8 837 aa20.89■□□□□ 0.93
VPS53-218ENST00000575207 ATN1P54259 1190 aaPredicted RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms