RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ZNF213O14771 459 aa16.29■□□□□ 0.2
CCDC40-209ENST00000573474 PLCG2P16885 1265 aa16.29■□□□□ 0.2
CCDC40-209ENST00000573474 NEK4P51957 841 aa16.29■□□□□ 0.2
CCDC40-209ENST00000573474 HSCBQ8IWL3 235 aa16.29■□□□□ 0.2
CCDC40-209ENST00000573474 JDP2Q8WYK2 163 aa16.29■□□□□ 0.2
CCDC40-209ENST00000573474 NAPBQ9H115 298 aa16.29■□□□□ 0.2
CCDC40-209ENST00000573474 ZSWIM6Q9HCJ5 1215 aa16.29■□□□□ 0.2
CCDC40-209ENST00000573474 EPB41L4AQ9HCS5 686 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-209ENST00000573474 DAXXQ9UER7 740 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-209ENST00000573474 MYO3BQ8WXR4 1341 aa16.28■□□□□ 0.2
CCDC40-209ENST00000573474 F8W031 263 aaPredicted RBP16.28■□□□□ 0.2
CCDC40-209ENST00000573474 VIL1P09327 827 aaKnown RBP16.28■□□□□ 0.2
CCDC40-209ENST00000573474 CASTP20810 708 aaKnown RBP16.28■□□□□ 0.2
CCDC40-209ENST00000573474 BTDP43251 543 aa16.28■□□□□ 0.2
CCDC40-209ENST00000573474 TDO2P48775 406 aa16.28■□□□□ 0.2
CCDC40-209ENST00000573474 HDLBPQ00341 1268 aaKnown RBP16.28■□□□□ 0.2
CCDC40-209ENST00000573474 ADCK5Q3MIX3 580 aa16.28■□□□□ 0.2
CCDC40-209ENST00000573474 HHIPL2Q6UWX4 724 aa16.28■□□□□ 0.2
CCDC40-209ENST00000573474 TBC1D2Q9BYX2 928 aa16.28■□□□□ 0.2
CCDC40-209ENST00000573474 ATP8A2Q9NTI2 1148 aa16.28■□□□□ 0.2
CCDC40-209ENST00000573474 CYP46A1Q9Y6A2 500 aa16.28■□□□□ 0.2
CCDC40-209ENST00000573474 TAF6LQ9Y6J9 622 aa16.28■□□□□ 0.2
CCDC40-209ENST00000573474 ARFGEF1Q9Y6D6 1849 aa16.27■□□□□ 0.2
CCDC40-209ENST00000573474 RAD17O75943 681 aa16.27■□□□□ 0.2
CCDC40-209ENST00000573474 RSBN1LQ6PCB5 846 aaPredicted RBP16.27■□□□□ 0.2
CCDC40-209ENST00000573474 SDR42E1Q8WUS8 393 aa16.27■□□□□ 0.2
CCDC40-209ENST00000573474 TEKT1Q969V4 418 aa16.27■□□□□ 0.2
CCDC40-209ENST00000573474 UPF3BQ9BZI7 483 aaKnown RBP16.27■□□□□ 0.2
CCDC40-209ENST00000573474 DAGLAQ9Y4D2 1042 aa16.27■□□□□ 0.2
CCDC40-209ENST00000573474 COL4A5P29400 1685 aa16.27■□□□□ 0.19
CCDC40-209ENST00000573474 E7EWF7 191 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 PSMD14O00487 310 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 HMGB1P09429 215 aaKnown RBP16.26■□□□□ 0.19
CCDC40-209ENST00000573474 MCM2P49736 904 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 SCNN1DP51172 638 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 HAND2P61296 217 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 RASSF7Q02833 373 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 BLOC1S2Q6QNY1 142 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 ARHGAP27Q6ZUM4 889 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 RUFY3Q7L099 469 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 KIAA0825Q8IV33 1275 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 SH3RF3Q8TEJ3 882 aaPredicted RBP16.26■□□□□ 0.19
CCDC40-209ENST00000573474 NEK1Q96PY6 1258 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 SCN9AQ15858 1988 aa16.26■□□□□ 0.19
CCDC40-209ENST00000573474 CRKP46108 304 aa16.25■□□□□ 0.19
CCDC40-209ENST00000573474 STOX1Q6ZVD7 989 aa16.25■□□□□ 0.19
CCDC40-209ENST00000573474 ZDHHC15Q96MV8 337 aa16.25■□□□□ 0.19
CCDC40-209ENST00000573474 DCP1AQ9NPI6 582 aaPredicted RBP16.25■□□□□ 0.19
CCDC40-209ENST00000573474 PDRG1Q9NUG6 133 aa16.25■□□□□ 0.19
CCDC40-209ENST00000573474 SERPINA10Q9UK55 444 aa16.25■□□□□ 0.19
CCDC40-209ENST00000573474 MYH2Q9UKX2 1941 aa16.25■□□□□ 0.19
CCDC40-209ENST00000573474 CD2BP2O95400 341 aaKnown RBP16.24■□□□□ 0.19
CCDC40-209ENST00000573474 RPS6KB1P23443 525 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 USP5P45974 858 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 RHBDL3P58872 404 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 CXCL9Q07325 125 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 TNIP1Q15025 636 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 CIAPIN1Q6FI81 312 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 TEX11Q8IYF3 940 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 AGBL3Q8NEM8 1001 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 TTC14Q96N46 770 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 GMLQ99445 158 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 ALDH8A1Q9H2A2 487 aaPredicted RBP16.24■□□□□ 0.19
CCDC40-209ENST00000573474 ANAPC4Q9UJX5 808 aa16.24■□□□□ 0.19
CCDC40-209ENST00000573474 K7ELQ4 463 aaPredicted RBP16.23■□□□□ 0.19
CCDC40-209ENST00000573474 SOCS7O14512 581 aa16.23■□□□□ 0.19
CCDC40-209ENST00000573474 CPA1P15085 419 aa16.23■□□□□ 0.19
CCDC40-209ENST00000573474 SLC4A3P48751 1232 aa16.23■□□□□ 0.19
CCDC40-209ENST00000573474 SBK1Q52WX2 424 aa16.23■□□□□ 0.19
CCDC40-209ENST00000573474 APOBEC3HQ6NTF7 200 aaKnown RBP16.23■□□□□ 0.19
CCDC40-209ENST00000573474 CTR9Q6PD62 1173 aa16.23■□□□□ 0.19
CCDC40-209ENST00000573474 TGFBRAP1Q8WUH2 860 aa16.23■□□□□ 0.19
CCDC40-209ENST00000573474 NBPF3Q9H094 633 aa16.23■□□□□ 0.19
CCDC40-209ENST00000573474 MKRN1Q9UHC7 482 aaKnown RBP16.23■□□□□ 0.19
CCDC40-209ENST00000573474 ZNF646O15015 1829 aaPredicted RBP16.23■□□□□ 0.19
CCDC40-209ENST00000573474 PSME4Q14997 1843 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 MINDY4BA8MYZ0 360 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 FZD9O00144 591 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 MMP14P50281 582 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 PRELPP51888 382 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 EIF6P56537 245 aaKnown RBP16.22■□□□□ 0.19
CCDC40-209ENST00000573474 PPARAQ07869 468 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 TRDNQ13061 729 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 DHX32Q7L7V1 743 aaKnown RBP16.22■□□□□ 0.19
CCDC40-209ENST00000573474 TBC1D10CQ8IV04 446 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 NCOA7Q8NI08 942 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 USP40Q9NVE5 1235 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 ARPP21Q9UBL0 812 aaPredicted RBP16.22■□□□□ 0.19
CCDC40-209ENST00000573474 HDAC9Q9UKV0 1011 aa16.22■□□□□ 0.19
CCDC40-209ENST00000573474 USP17L12C9JPN9 530 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 USP17L21D6R901 530 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 LMNB1P20700 586 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 RBM5P52756 815 aaKnown RBP eCLIP16.21■□□□□ 0.19
CCDC40-209ENST00000573474 CTDSPL2Q05D32 466 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 ANKRD1Q15327 319 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 AKNAD1Q5T1N1 836 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 RALYLQ86SE5 291 aaKnown RBP16.21■□□□□ 0.19
CCDC40-209ENST00000573474 AMOTL1Q8IY63 956 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 STAG1Q8WVM7 1258 aa16.21■□□□□ 0.19
CCDC40-209ENST00000573474 RNF41Q9H4P4 317 aaPredicted RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms