RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 CCDC82Q8N4S0 544 aa14.08□□□□□ -0.16
CIITA-209ENST00000573309 TRERF1Q96PN7 1200 aa14.08□□□□□ -0.16
CIITA-209ENST00000573309 ZKSCAN3Q9BRR0 538 aa14.08□□□□□ -0.16
CIITA-209ENST00000573309 SLC5A1P13866 664 aa14.08□□□□□ -0.16
CIITA-209ENST00000573309 CDK11BP21127 795 aaKnown RBP14.08□□□□□ -0.16
CIITA-209ENST00000573309 PUM3Q15397 648 aaKnown RBP14.08□□□□□ -0.16
CIITA-209ENST00000573309 RBM43Q6ZSC3 357 aaKnown RBP14.08□□□□□ -0.16
CIITA-209ENST00000573309 CLSTN2Q9H4D0 955 aa14.08□□□□□ -0.16
CIITA-209ENST00000573309 MTMR7Q9Y216 660 aa14.08□□□□□ -0.16
CIITA-209ENST00000573309 HIP1O00291 1037 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 CIAO1O76071 339 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 PTPN14Q15678 1187 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 RNF20Q5VTR2 975 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 NEK1Q96PY6 1258 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 PARP10Q53GL7 1025 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 TPTE2Q6XPS3 522 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 LRRN4CLQ8ND94 238 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 PGBD1Q96JS3 809 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 ZSCAN31Q96LW9 406 aaPredicted RBP14.07□□□□□ -0.16
CIITA-209ENST00000573309 ELP1O95163 1332 aa14.07□□□□□ -0.16
CIITA-209ENST00000573309 FGAP02671 866 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 PSMA5P28066 241 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 SPATA5Q8NB90 893 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 SDR42E1Q8WUS8 393 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 SPATA32Q96LK8 384 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 SH2B1Q9NRF2 756 aaPredicted RBP14.06□□□□□ -0.16
CIITA-209ENST00000573309 NARFQ9UHQ1 456 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 A0A087WWV3 80 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 MINDY4BA8MYZ0 360 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 SKILP12757 684 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 EVX2Q03828 476 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 IPO4Q8TEX9 1081 aaKnown RBP14.06□□□□□ -0.16
CIITA-209ENST00000573309 AIDAQ96BJ3 306 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 CDHR2Q9BYE9 1310 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 CYP2D7A0A087X1C5 515 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 MBD4O95243 580 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 CTDSPL2Q05D32 466 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 C11orf57Q6ZUT1 292 aaPredicted RBP14.06□□□□□ -0.16
CIITA-209ENST00000573309 VGLL2Q8N8G2 317 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 LEO1Q8WVC0 666 aaPredicted RBP14.06□□□□□ -0.16
CIITA-209ENST00000573309 LPIN2Q92539 896 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 MYL10Q9BUA6 226 aa14.06□□□□□ -0.16
CIITA-209ENST00000573309 RIC1Q4ADV7 1423 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 PLA2G12BQ9BX93 195 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 MINPP1Q9UNW1 487 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 RIMBP2O15034 1052 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 PRDM1O75626 825 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 RPS8P62241 208 aaKnown RBP14.05□□□□□ -0.16
CIITA-209ENST00000573309 IQCB1Q15051 598 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 ZMYM1Q5SVZ6 1142 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 PROM2Q8N271 834 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 CNBD1Q8NA66 436 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 GTF3C6Q969F1 213 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 ERO1AQ96HE7 468 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 TAF1P21675 1872 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 TULP2O00295 520 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 PDE6AP16499 860 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 CCZ1BP86790 482 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 CCZ1P86791 482 aaPredicted RBP14.05□□□□□ -0.16
CIITA-209ENST00000573309 TXNRD1Q16881 649 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 OTUD7BQ6GQQ9 843 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 CDC5LQ99459 802 aaKnown RBP14.05□□□□□ -0.16
CIITA-209ENST00000573309 GJB4Q9NTQ9 266 aa14.05□□□□□ -0.16
CIITA-209ENST00000573309 DDX19AQ9NUU7 478 aaKnown RBP14.05□□□□□ -0.16
CIITA-209ENST00000573309 CDC25BP30305 580 aa14.04□□□□□ -0.16
CIITA-209ENST00000573309 BICD2Q8TD16 824 aa14.04□□□□□ -0.16
CIITA-209ENST00000573309 H3BQV1 296 aa14.04□□□□□ -0.16
CIITA-209ENST00000573309 DYNLL1P63167 89 aaKnown RBP14.04□□□□□ -0.16
CIITA-209ENST00000573309 IFFO2Q5TF58 517 aa14.04□□□□□ -0.16
CIITA-209ENST00000573309 FILIP1Q7Z7B0 1213 aa14.04□□□□□ -0.16
CIITA-209ENST00000573309 CCDC69A6NI79 296 aa14.03□□□□□ -0.16
CIITA-209ENST00000573309 F8W031 263 aaPredicted RBP14.03□□□□□ -0.16
CIITA-209ENST00000573309 ERCC6LQ2NKX8 1250 aa14.03□□□□□ -0.16
CIITA-209ENST00000573309 PDGFDQ9GZP0 370 aaPredicted RBP14.03□□□□□ -0.16
CIITA-209ENST00000573309 E7EWF7 191 aa14.03□□□□□ -0.16
CIITA-209ENST00000573309 RPS6KB1P23443 525 aa14.03□□□□□ -0.16
CIITA-209ENST00000573309 TOB2Q14106 344 aaPredicted RBP14.03□□□□□ -0.16
CIITA-209ENST00000573309 CCAR2Q8N163 923 aaKnown RBP14.03□□□□□ -0.16
CIITA-209ENST00000573309 SLU7O95391 586 aaKnown RBP14.03□□□□□ -0.16
CIITA-209ENST00000573309 CYP7A1P22680 504 aa14.03□□□□□ -0.16
CIITA-209ENST00000573309 HNRNPH2P55795 449 aaKnown RBP14.03□□□□□ -0.16
CIITA-209ENST00000573309 ADGRA1Q86SQ6 560 aa14.03□□□□□ -0.16
CIITA-209ENST00000573309 CALCOCO1Q9P1Z2 691 aa14.03□□□□□ -0.16
CIITA-209ENST00000573309 MED23Q9ULK4 1368 aa14.03□□□□□ -0.16
CIITA-209ENST00000573309 CYP2C19P33261 490 aa14.02□□□□□ -0.16
CIITA-209ENST00000573309 CMTR1Q8N1G2 835 aaKnown RBP14.02□□□□□ -0.16
CIITA-209ENST00000573309 NOL10Q9BSC4 688 aaKnown RBP14.02□□□□□ -0.16
CIITA-209ENST00000573309 SCAND2PQ9GZW5 306 aaPredicted RBP14.02□□□□□ -0.16
CIITA-209ENST00000573309 SENP2Q9HC62 589 aa14.02□□□□□ -0.16
CIITA-209ENST00000573309 FHOD1Q9Y613 1164 aa14.02□□□□□ -0.16
CIITA-209ENST00000573309 LCORLQ8N3X6 602 aa14.02□□□□□ -0.17
CIITA-209ENST00000573309 KCNB2Q92953 911 aa14.02□□□□□ -0.17
CIITA-209ENST00000573309 TM6SF1Q9BZW5 370 aa14.02□□□□□ -0.17
CIITA-209ENST00000573309 COL4A1P02462 1669 aa14.02□□□□□ -0.17
CIITA-209ENST00000573309 UBR2Q8IWV8 1755 aa14.02□□□□□ -0.17
CIITA-209ENST00000573309 B4E1Z4 1266 aa14.02□□□□□ -0.17
CIITA-209ENST00000573309 ZNF827Q17R98 1081 aa14.02□□□□□ -0.17
CIITA-209ENST00000573309 SERPINB2P05120 415 aa14.01□□□□□ -0.17
CIITA-209ENST00000573309 H2AFXP16104 143 aaPredicted RBP14.01□□□□□ -0.17
CIITA-209ENST00000573309 TDO2P48775 406 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms