RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 CAPN5O15484 640 aaPredicted RBP12.28□□□□□ -0.44
CIITA-208ENST00000572665 SERPINB2P05120 415 aa12.28□□□□□ -0.44
CIITA-208ENST00000572665 IGFBP4P22692 258 aa12.28□□□□□ -0.44
CIITA-208ENST00000572665 IL6STP40189 918 aaPredicted RBP12.28□□□□□ -0.44
CIITA-208ENST00000572665 FOXK2Q01167 660 aa12.28□□□□□ -0.44
CIITA-208ENST00000572665 NFIXQ14938 502 aa12.28□□□□□ -0.44
CIITA-208ENST00000572665 TLR1Q15399 786 aa12.28□□□□□ -0.44
CIITA-208ENST00000572665 C9orf131Q5VYM1 1079 aa12.28□□□□□ -0.44
CIITA-208ENST00000572665 TSPAN10Q9H1Z9 355 aaPredicted RBP12.28□□□□□ -0.44
CIITA-208ENST00000572665 SCHIP1Q9P0W5 487 aaPredicted RBP12.28□□□□□ -0.44
CIITA-208ENST00000572665 BTBD11A6QL63 1104 aa12.27□□□□□ -0.45
CIITA-208ENST00000572665 H0YIN7 160 aa12.27□□□□□ -0.45
CIITA-208ENST00000572665 MEN1O00255 615 aa12.27□□□□□ -0.45
CIITA-208ENST00000572665 NPHP1O15259 732 aa12.27□□□□□ -0.45
CIITA-208ENST00000572665 CHRNA5P30532 468 aa12.27□□□□□ -0.45
CIITA-208ENST00000572665 PRKAR2BP31323 418 aa12.27□□□□□ -0.45
CIITA-208ENST00000572665 EIF5P55010 431 aaKnown RBP12.27□□□□□ -0.45
CIITA-208ENST00000572665 TAS1R3Q7RTX0 852 aa12.27□□□□□ -0.45
CIITA-208ENST00000572665 ZNF395Q9H8N7 513 aaPredicted RBP12.27□□□□□ -0.45
CIITA-208ENST00000572665 RNF181Q9P0P0 153 aa12.27□□□□□ -0.45
CIITA-208ENST00000572665 SBF1O95248 1867 aa12.27□□□□□ -0.45
CIITA-208ENST00000572665 ARID4AP29374 1257 aaPredicted RBP12.26□□□□□ -0.45
CIITA-208ENST00000572665 PDE6BP35913 854 aa12.26□□□□□ -0.45
CIITA-208ENST00000572665 SCNN1AP37088 669 aa12.26□□□□□ -0.45
CIITA-208ENST00000572665 TTLL6Q8N841 843 aa12.26□□□□□ -0.45
CIITA-208ENST00000572665 IL17REQ8NFR9 667 aa12.26□□□□□ -0.45
CIITA-208ENST00000572665 SCG3Q8WXD2 468 aaKnown RBP12.26□□□□□ -0.45
CIITA-208ENST00000572665 ZNF496Q96IT1 587 aaPredicted RBP12.26□□□□□ -0.45
CIITA-208ENST00000572665 CEMIPQ8WUJ3 1361 aa12.26□□□□□ -0.45
CIITA-208ENST00000572665 SCN7AQ01118 1682 aa12.26□□□□□ -0.45
CIITA-208ENST00000572665 TNRC6CQ9HCJ0 1690 aaKnown RBP12.26□□□□□ -0.45
CIITA-208ENST00000572665 HTATSF1O43719 755 aaKnown RBP12.25□□□□□ -0.45
CIITA-208ENST00000572665 C21orf2O43822 256 aa12.25□□□□□ -0.45
CIITA-208ENST00000572665 AVPP01185 164 aa12.25□□□□□ -0.45
CIITA-208ENST00000572665 U2AF1L5P0DN76 240 aaPredicted RBP12.25□□□□□ -0.45
CIITA-208ENST00000572665 U2AF1Q01081 240 aaKnown RBP eCLIP12.25□□□□□ -0.45
CIITA-208ENST00000572665 CENPCQ03188 943 aa12.25□□□□□ -0.45
CIITA-208ENST00000572665 FKBP5Q13451 457 aaPredicted RBP12.25□□□□□ -0.45
CIITA-208ENST00000572665 C2CD5Q86YS7 1000 aa12.25□□□□□ -0.45
CIITA-208ENST00000572665 SLC9A9Q8IVB4 645 aa12.25□□□□□ -0.45
CIITA-208ENST00000572665 NLRP3Q96P20 1036 aa12.25□□□□□ -0.45
CIITA-208ENST00000572665 PURBQ96QR8 312 aaKnown RBP12.25□□□□□ -0.45
CIITA-208ENST00000572665 TSEN34Q9BSV6 310 aaKnown RBP12.25□□□□□ -0.45
CIITA-208ENST00000572665 GZF1Q9H116 711 aaPredicted RBP12.25□□□□□ -0.45
CIITA-208ENST00000572665 CARMIL3Q8ND23 1372 aa12.25□□□□□ -0.45
CIITA-208ENST00000572665 LMNB1P20700 586 aa12.24□□□□□ -0.45
CIITA-208ENST00000572665 BICDL1Q6ZP65 573 aa12.24□□□□□ -0.45
CIITA-208ENST00000572665 SETDB2Q96T68 719 aa12.24□□□□□ -0.45
CIITA-208ENST00000572665 IQSEC3Q9UPP2 1182 aaPredicted RBP12.24□□□□□ -0.45
CIITA-208ENST00000572665 ZNF652Q9Y2D9 606 aa12.24□□□□□ -0.45
CIITA-208ENST00000572665 CDK2AP1O14519 115 aa12.23□□□□□ -0.45
CIITA-208ENST00000572665 PPP2R1AP30153 589 aa12.23□□□□□ -0.45
CIITA-208ENST00000572665 ST5P78524 1137 aa12.23□□□□□ -0.45
CIITA-208ENST00000572665 FSTL1Q12841 308 aa12.23□□□□□ -0.45
CIITA-208ENST00000572665 TBCELQ5QJ74 424 aa12.23□□□□□ -0.45
CIITA-208ENST00000572665 LINC00528Q8N1L1 170 aa12.23□□□□□ -0.45
CIITA-208ENST00000572665 BRIP1Q9BX63 1249 aa12.23□□□□□ -0.45
CIITA-208ENST00000572665 PNNQ9H307 717 aaKnown RBP12.23□□□□□ -0.45
CIITA-208ENST00000572665 USP3Q9Y6I4 520 aa12.23□□□□□ -0.45
CIITA-208ENST00000572665 SPINT1O43278 529 aa12.22□□□□□ -0.45
CIITA-208ENST00000572665 SNRPA1P09661 255 aaKnown RBP12.22□□□□□ -0.45
CIITA-208ENST00000572665 SOGA3Q5TF21 947 aa12.22□□□□□ -0.45
CIITA-208ENST00000572665 TBC1D9BQ66K14 1250 aa12.22□□□□□ -0.45
CIITA-208ENST00000572665 CLEC4GQ6UXB4 293 aa12.22□□□□□ -0.45
CIITA-208ENST00000572665 PHACTR3Q96KR7 559 aa12.22□□□□□ -0.45
CIITA-208ENST00000572665 NMRK2Q9NPI5 230 aa12.22□□□□□ -0.45
CIITA-208ENST00000572665 CCDC88AQ3V6T2 1871 aa12.22□□□□□ -0.45
CIITA-208ENST00000572665 BCORQ6W2J9 1755 aa12.21□□□□□ -0.45
CIITA-208ENST00000572665 PPP1R12BO60237 982 aaPredicted RBP12.21□□□□□ -0.45
CIITA-208ENST00000572665 CNBD1Q8NA66 436 aa12.21□□□□□ -0.45
CIITA-208ENST00000572665 PNISRQ8TF01 805 aaKnown RBP12.21□□□□□ -0.45
CIITA-208ENST00000572665 ZNF622Q969S3 477 aaKnown RBP eCLIP12.21□□□□□ -0.45
CIITA-208ENST00000572665 INSM2Q96T92 566 aaPredicted RBP12.21□□□□□ -0.45
CIITA-208ENST00000572665 MKNK1Q9BUB5 465 aa12.21□□□□□ -0.45
CIITA-208ENST00000572665 NRG2O14511 850 aaPredicted RBP12.2□□□□□ -0.46
CIITA-208ENST00000572665 A1BGP04217 495 aa12.2□□□□□ -0.46
CIITA-208ENST00000572665 GPC1P35052 558 aa12.2□□□□□ -0.46
CIITA-208ENST00000572665 STAG2Q8N3U4 1231 aa12.2□□□□□ -0.46
CIITA-208ENST00000572665 NBPF15Q8N660 670 aa12.2□□□□□ -0.46
CIITA-208ENST00000572665 MTMR7Q9Y216 660 aa12.2□□□□□ -0.46
CIITA-208ENST00000572665 TIAM2Q8IVF5 1701 aa12.2□□□□□ -0.46
CIITA-208ENST00000572665 WDR90Q96KV7 1748 aa12.2□□□□□ -0.46
CIITA-208ENST00000572665 ANKRD31Q8N7Z5 1873 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 GFRA3O60609 400 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 DGAT1O75907 488 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 UPP2O95045 317 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 VEGFAP15692 232 aaPredicted RBP12.19□□□□□ -0.46
CIITA-208ENST00000572665 SERPINB4P48594 390 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 PSMA6P60900 246 aaKnown RBP12.19□□□□□ -0.46
CIITA-208ENST00000572665 RASSF7Q02833 373 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 TAF7Q15545 349 aaPredicted RBP12.19□□□□□ -0.46
CIITA-208ENST00000572665 STYK1Q6J9G0 422 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 PRR5LQ6MZQ0 368 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 ZNF295-AS1Q8N0V1 137 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 SMC1BQ8NDV3 1235 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 COL26A1Q96A83 441 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 ZSCAN10Q96SZ4 725 aaPredicted RBP12.19□□□□□ -0.46
CIITA-208ENST00000572665 RRAGCQ9HB90 399 aa12.19□□□□□ -0.46
CIITA-208ENST00000572665 DICER1Q9UPY3 1922 aaKnown RBP12.19□□□□□ -0.46
CIITA-208ENST00000572665 GLTPD2A6NH11 291 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms