RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 KCNQ5Q9NR82 932 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 POLLQ9UGP5 575 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 TRMT112Q9UI30 125 aaKnown RBP7.69□□□□□ -1.18
VPS53-208ENST00000570650 TRIM17Q9Y577 477 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 SH3TC1Q8TE82 1336 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 DDX60Q8IY21 1712 aaKnown RBP7.69□□□□□ -1.18
VPS53-208ENST00000570650 ZNF609O15014 1411 aa7.69□□□□□ -1.18
VPS53-208ENST00000570650 RPIAP49247 311 aa7.68□□□□□ -1.18
VPS53-208ENST00000570650 GPSM2P81274 684 aa7.68□□□□□ -1.18
VPS53-208ENST00000570650 ZNF697Q5TEC3 545 aa7.68□□□□□ -1.18
VPS53-208ENST00000570650 DESI1Q6ICB0 168 aa7.68□□□□□ -1.18
VPS53-208ENST00000570650 PTCRAQ6ISU1 281 aaPredicted RBP7.68□□□□□ -1.18
VPS53-208ENST00000570650 TRIM67Q6ZTA4 783 aa7.68□□□□□ -1.18
VPS53-208ENST00000570650 ZNF598Q86UK7 904 aaKnown RBP7.68□□□□□ -1.18
VPS53-208ENST00000570650 AGBL3Q8NEM8 1001 aa7.68□□□□□ -1.18
VPS53-208ENST00000570650 CELF1Q92879 486 aaKnown RBP7.68□□□□□ -1.18
VPS53-208ENST00000570650 THUMPD2Q9BTF0 503 aaKnown RBP7.68□□□□□ -1.18
VPS53-208ENST00000570650 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS53-208ENST00000570650 IRX2Q9BZI1 471 aaPredicted RBP7.68□□□□□ -1.18
VPS53-208ENST00000570650 TAF1P21675 1872 aa7.68□□□□□ -1.18
VPS53-208ENST00000570650 ALDH1A1P00352 501 aa7.67□□□□□ -1.18
VPS53-208ENST00000570650 NEFMP07197 916 aa7.67□□□□□ -1.18
VPS53-208ENST00000570650 TCIRG1Q13488 830 aa7.67□□□□□ -1.18
VPS53-208ENST00000570650 SF3B3Q15393 1217 aaKnown RBP7.67□□□□□ -1.18
VPS53-208ENST00000570650 PTPRNQ16849 979 aa7.67□□□□□ -1.18
VPS53-208ENST00000570650 OTOP1Q7RTM1 612 aa7.67□□□□□ -1.18
VPS53-208ENST00000570650 TBC1D16Q8TBP0 767 aa7.67□□□□□ -1.18
VPS53-208ENST00000570650 ZC3H12CQ9C0D7 883 aaKnown RBP7.67□□□□□ -1.18
VPS53-208ENST00000570650 R3HDMLQ9H3Y0 253 aa7.67□□□□□ -1.18
VPS53-208ENST00000570650 MYOZ2Q9NPC6 264 aa7.67□□□□□ -1.18
VPS53-208ENST00000570650 SCN9AQ15858 1988 aa7.67□□□□□ -1.18
VPS53-208ENST00000570650 KIAA0100Q14667 2235 aaKnown RBP7.67□□□□□ -1.18
VPS53-208ENST00000570650 MKI67P46013 3256 aaKnown RBP7.67□□□□□ -1.18
VPS53-208ENST00000570650 ANXA1P04083 346 aa7.66□□□□□ -1.18
VPS53-208ENST00000570650 USP17L8P0C7I0 530 aa7.66□□□□□ -1.18
VPS53-208ENST00000570650 CCNYL3P0C7X3 344 aa7.66□□□□□ -1.18
VPS53-208ENST00000570650 EN2P19622 333 aaPredicted RBP7.66□□□□□ -1.18
VPS53-208ENST00000570650 EIF2S2P20042 333 aaKnown RBP7.66□□□□□ -1.18
VPS53-208ENST00000570650 NF2P35240 595 aa7.66□□□□□ -1.18
VPS53-208ENST00000570650 TRIM32Q13049 653 aa7.66□□□□□ -1.18
VPS53-208ENST00000570650 PROSER3Q2NL68 480 aa7.66□□□□□ -1.18
VPS53-208ENST00000570650 LYPD8Q6UX82 237 aa7.66□□□□□ -1.18
VPS53-208ENST00000570650 COPS6Q7L5N1 327 aa7.66□□□□□ -1.18
VPS53-208ENST00000570650 TSC1Q92574 1164 aa7.66□□□□□ -1.18
VPS53-208ENST00000570650 RBBP6Q7Z6E9 1792 aaKnown RBP7.66□□□□□ -1.18
VPS53-208ENST00000570650 DLL1O00548 723 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 UFL1O94874 794 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 PTPN12Q05209 780 aaKnown RBP7.65□□□□□ -1.18
VPS53-208ENST00000570650 AIMP1Q12904 312 aaKnown RBP7.65□□□□□ -1.18
VPS53-208ENST00000570650 PRAMEF18Q5VWM3 479 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 ARMC9Q7Z3E5 817 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 XAGE3Q8WTP9 111 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 ARMC5Q96C12 935 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 ERO1AQ96HE7 468 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 GMLQ99445 158 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 PODXL2Q9NZ53 605 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 TSPYL4Q9UJ04 414 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 SCAF8Q9UPN6 1271 aaKnown RBP7.65□□□□□ -1.18
VPS53-208ENST00000570650 PTPN22Q9Y2R2 807 aa7.65□□□□□ -1.18
VPS53-208ENST00000570650 MANSC4A6NHS7 340 aaPredicted RBP7.64□□□□□ -1.19
VPS53-208ENST00000570650 ZBTB24O43167 697 aaPredicted RBP7.64□□□□□ -1.19
VPS53-208ENST00000570650 GFRA3O60609 400 aa7.64□□□□□ -1.19
VPS53-208ENST00000570650 INHBEP58166 350 aa7.64□□□□□ -1.19
VPS53-208ENST00000570650 RPS8P62241 208 aaKnown RBP7.64□□□□□ -1.19
VPS53-208ENST00000570650 EVA1BQ9NVM1 165 aa7.64□□□□□ -1.19
VPS53-208ENST00000570650 PKD2L1Q9P0L9 805 aa7.64□□□□□ -1.19
VPS53-208ENST00000570650 GGA1Q9UJY5 639 aa7.64□□□□□ -1.19
VPS53-208ENST00000570650 DLG5Q8TDM6 1919 aa7.64□□□□□ -1.19
VPS53-208ENST00000570650 USP17L3A6NCW0 530 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 USP17L4A6NCW7 530 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 TNFRSF10AO00220 468 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 GDF9O60383 454 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 CD2BP2O95400 341 aaKnown RBP7.63□□□□□ -1.19
VPS53-208ENST00000570650 PPP2R1AP30153 589 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 NFE2L2Q16236 605 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 NBPF9Q3BBW0 867 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 LDLRAD1Q5T700 205 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 USP17L1Q7RTZ2 530 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 PODNQ7Z5L7 613 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 ZNF428Q96B54 188 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 FAM89AQ96GI7 184 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 EFCC1Q9HA90 598 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 GOPCQ9HD26 462 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 ANKIB1Q9P2G1 1089 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 MAP10Q9P2G4 905 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 PSME4Q14997 1843 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 COL4A1P02462 1669 aa7.63□□□□□ -1.19
VPS53-208ENST00000570650 WNT10BO00744 389 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 IRS4O14654 1257 aaPredicted RBP7.62□□□□□ -1.19
VPS53-208ENST00000570650 F12P00748 615 aaPredicted RBP7.62□□□□□ -1.19
VPS53-208ENST00000570650 SKOR1P84550 965 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 KCNH2Q12809 1159 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 FOXC1Q12948 553 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 PRKG1Q13976 671 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 PPP2R2DQ66LE6 453 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 APOBEC3FQ8IUX4 373 aaKnown RBP7.62□□□□□ -1.19
VPS53-208ENST00000570650 OGFOD1Q8N543 542 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 SLC17A8Q8NDX2 589 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 PLBD2Q8NHP8 589 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 CD99L2Q8TCZ2 262 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms