RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CDC42EP5Q6NZY7 148 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 OTOP1Q7RTM1 612 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 FAM151AQ8WW52 585 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 BRI3BPQ8WY22 251 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 ZKSCAN4Q969J2 545 aaPredicted RBP19.97■□□□□ 0.79
CLN3-229ENST00000567963 WRNIP1Q96S55 665 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 SNCAIPQ9Y6H5 919 aa19.97■□□□□ 0.79
CLN3-229ENST00000567963 RPAP1Q9BWH6 1393 aaPredicted RBP19.97■□□□□ 0.79
CLN3-229ENST00000567963 CCL15-CCL14A0A0B4J2E2 113 aa19.96■□□□□ 0.79
CLN3-229ENST00000567963 SPDYE5A6NIY4 337 aa19.96■□□□□ 0.79
CLN3-229ENST00000567963 BCAR3O75815 825 aa19.96■□□□□ 0.79
CLN3-229ENST00000567963 TRIM27P14373 513 aa19.96■□□□□ 0.79
CLN3-229ENST00000567963 CCL15Q16663 113 aa19.96■□□□□ 0.79
CLN3-229ENST00000567963 DCAF15Q66K64 600 aa19.96■□□□□ 0.79
CLN3-229ENST00000567963 ERO1AQ96HE7 468 aa19.96■□□□□ 0.79
CLN3-229ENST00000567963 SP3Q02447 781 aa19.95■□□□□ 0.78
CLN3-229ENST00000567963 ATF7IPQ6VMQ6 1270 aa19.95■□□□□ 0.78
CLN3-229ENST00000567963 MIGA2Q7L4E1 593 aa19.95■□□□□ 0.78
CLN3-229ENST00000567963 ERO1BQ86YB8 467 aa19.95■□□□□ 0.78
CLN3-229ENST00000567963 TCP10Q12799 353 aa19.94■□□□□ 0.78
CLN3-229ENST00000567963 ZGPATQ8N5A5 531 aaKnown RBP19.94■□□□□ 0.78
CLN3-229ENST00000567963 CD99L2Q8TCZ2 262 aa19.94■□□□□ 0.78
CLN3-229ENST00000567963 FRAT1Q92837 279 aaPredicted RBP19.94■□□□□ 0.78
CLN3-229ENST00000567963 AKAP2Q9Y2D5 859 aa19.94■□□□□ 0.78
CLN3-229ENST00000567963 A0A1B0GUL7 405 aa19.93■□□□□ 0.78
CLN3-229ENST00000567963 TFCP2Q12800 502 aa19.93■□□□□ 0.78
CLN3-229ENST00000567963 NFIAQ12857 509 aa19.93■□□□□ 0.78
CLN3-229ENST00000567963 FAM43AQ8N2R8 423 aa19.93■□□□□ 0.78
CLN3-229ENST00000567963 ZNF341Q9BYN7 854 aa19.93■□□□□ 0.78
CLN3-229ENST00000567963 USP40Q9NVE5 1235 aa19.93■□□□□ 0.78
CLN3-229ENST00000567963 TNNQ9UQP3 1299 aa19.93■□□□□ 0.78
CLN3-229ENST00000567963 IRF6O14896 467 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 CETPP11597 493 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 RASGRF1Q13972 1273 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 TAF1CQ15572 869 aaPredicted RBP19.92■□□□□ 0.78
CLN3-229ENST00000567963 XAGE2Q96GT9 111 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 ZFYVE28Q9HCC9 887 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 FAM198AQ9UFP1 575 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 AK9Q5TCS8 1911 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 GNAI2P04899 355 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 CLUAP1Q96AJ1 413 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 EFCC1Q9HA90 598 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 ZNF112Q9UJU3 913 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 PTPN22Q9Y2R2 807 aa19.92■□□□□ 0.78
CLN3-229ENST00000567963 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.92■□□□□ 0.78
CLN3-229ENST00000567963 PDS5AQ29RF7 1337 aaKnown RBP19.91■□□□□ 0.78
CLN3-229ENST00000567963 MYH2Q9UKX2 1941 aa19.91■□□□□ 0.78
CLN3-229ENST00000567963 INPP5BP32019 993 aa19.91■□□□□ 0.78
CLN3-229ENST00000567963 CAP1Q01518 475 aa19.91■□□□□ 0.78
CLN3-229ENST00000567963 PPATQ06203 517 aa19.91■□□□□ 0.78
CLN3-229ENST00000567963 PPIL2Q13356 520 aa19.91■□□□□ 0.78
CLN3-229ENST00000567963 SNAPC2Q13487 334 aa19.91■□□□□ 0.78
CLN3-229ENST00000567963 MVPQ14764 893 aaKnown RBP19.9■□□□□ 0.78
CLN3-229ENST00000567963 ZFPM1Q8IX07 1006 aa19.9■□□□□ 0.78
CLN3-229ENST00000567963 ABCF2Q9UG63 623 aa19.9■□□□□ 0.78
CLN3-229ENST00000567963 GAKO14976 1311 aa19.9■□□□□ 0.78
CLN3-229ENST00000567963 PNMA6EA0A0J9YXQ4 647 aa19.89■□□□□ 0.77
CLN3-229ENST00000567963 BTBD19C9JJ37 291 aa19.89■□□□□ 0.77
CLN3-229ENST00000567963 FAM163AQ96GL9 167 aaPredicted RBP19.89■□□□□ 0.77
CLN3-229ENST00000567963 NEUROD6Q96NK8 337 aa19.89■□□□□ 0.77
CLN3-229ENST00000567963 IDI2Q9BXS1 227 aa19.89■□□□□ 0.77
CLN3-229ENST00000567963 ZCCHC17Q9NP64 241 aaKnown RBP19.89■□□□□ 0.77
CLN3-229ENST00000567963 BRCA2P51587 3418 aa19.89■□□□□ 0.77
CLN3-229ENST00000567963 SPTY2D1Q68D10 685 aaPredicted RBP19.88■□□□□ 0.77
CLN3-229ENST00000567963 DZIP1Q86YF9 867 aaKnown RBP19.88■□□□□ 0.77
CLN3-229ENST00000567963 SLF2Q8IX21 1173 aa19.88■□□□□ 0.77
CLN3-229ENST00000567963 TLR2O60603 784 aa19.87■□□□□ 0.77
CLN3-229ENST00000567963 ENTPD3O75355 529 aa19.87■□□□□ 0.77
CLN3-229ENST00000567963 WDHD1O75717 1129 aaPredicted RBP19.87■□□□□ 0.77
CLN3-229ENST00000567963 RGS3P49796 1198 aa19.87■□□□□ 0.77
CLN3-229ENST00000567963 ZKSCAN2Q63HK3 967 aa19.87■□□□□ 0.77
CLN3-229ENST00000567963 MKI67P46013 3256 aaKnown RBP19.87■□□□□ 0.77
CLN3-229ENST00000567963 PDE4DIPQ5VU43 2346 aa19.87■□□□□ 0.77
CLN3-229ENST00000567963 G3BP1Q13283 466 aaKnown RBP eCLIP19.86■□□□□ 0.77
CLN3-229ENST00000567963 ARHGEF6Q15052 776 aa19.86■□□□□ 0.77
CLN3-229ENST00000567963 NOL9Q5SY16 702 aaKnown RBP19.86■□□□□ 0.77
CLN3-229ENST00000567963 TMEM57Q8N5G2 664 aa19.86■□□□□ 0.77
CLN3-229ENST00000567963 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.86■□□□□ 0.77
CLN3-229ENST00000567963 ERICH6Q7L0X2 663 aa19.86■□□□□ 0.77
CLN3-229ENST00000567963 MIER1Q8N108 512 aa19.86■□□□□ 0.77
CLN3-229ENST00000567963 HMG20BQ9P0W2 317 aa19.86■□□□□ 0.77
CLN3-229ENST00000567963 KCNH4Q9UQ05 1017 aa19.86■□□□□ 0.77
CLN3-229ENST00000567963 BTDP43251 543 aa19.85■□□□□ 0.77
CLN3-229ENST00000567963 HNRNPUQ00839 825 aaKnown RBP eCLIP19.85■□□□□ 0.77
CLN3-229ENST00000567963 MECOMQ03112 1051 aa19.85■□□□□ 0.77
CLN3-229ENST00000567963 GORABQ5T7V8 394 aa19.85■□□□□ 0.77
CLN3-229ENST00000567963 SPATA5Q8NB90 893 aa19.85■□□□□ 0.77
CLN3-229ENST00000567963 ATRNL1Q5VV63 1379 aa19.85■□□□□ 0.77
CLN3-229ENST00000567963 MROH7-TTC4A0A0A0MT08 1334 aa19.84■□□□□ 0.77
CLN3-229ENST00000567963 PHF20L1A8MW92 1017 aa19.84■□□□□ 0.77
CLN3-229ENST00000567963 ARID4AP29374 1257 aaPredicted RBP19.84■□□□□ 0.77
CLN3-229ENST00000567963 MAP3K10Q02779 954 aa19.84■□□□□ 0.77
CLN3-229ENST00000567963 RFX7Q2KHR2 1363 aa19.84■□□□□ 0.77
CLN3-229ENST00000567963 SH3BP5LQ7L8J4 393 aa19.84■□□□□ 0.77
CLN3-229ENST00000567963 ZNF384Q8TF68 577 aa19.84■□□□□ 0.77
CLN3-229ENST00000567963 ARMC5Q96C12 935 aa19.84■□□□□ 0.77
CLN3-229ENST00000567963 DDX4Q9NQI0 724 aaKnown RBP19.84■□□□□ 0.77
CLN3-229ENST00000567963 GPR75-ASB3A0A0A6YYF3 556 aa19.83■□□□□ 0.76
CLN3-229ENST00000567963 PI16Q6UXB8 463 aa19.83■□□□□ 0.76
CLN3-229ENST00000567963 ANKRD23Q86SG2 305 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms