RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PDE1AP54750 535 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 CDAN1Q8IWY9 1227 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 GPATCH3Q96I76 525 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 STAP2Q9UGK3 403 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 CDK5RAP2Q96SN8 1893 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 CNTNAP1P78357 1384 aa23.78■■□□□ 1.4
CLN3-225ENST00000566824 GPR75-ASB3A0A0A6YYF3 556 aa23.78■■□□□ 1.4
CLN3-225ENST00000566824 MYO1BO43795 1136 aa23.78■■□□□ 1.4
CLN3-225ENST00000566824 APLP1P51693 650 aa23.78■■□□□ 1.4
CLN3-225ENST00000566824 NAA16Q6N069 864 aaPredicted RBP23.78■■□□□ 1.4
CLN3-225ENST00000566824 APOBEC3FQ8IUX4 373 aaKnown RBP23.78■■□□□ 1.4
CLN3-225ENST00000566824 MAGEB6Q8N7X4 407 aa23.78■■□□□ 1.4
CLN3-225ENST00000566824 DEFB129Q9H1M3 183 aa23.78■■□□□ 1.4
CLN3-225ENST00000566824 ZNF408Q9H9D4 720 aa23.78■■□□□ 1.4
CLN3-225ENST00000566824 USP40Q9NVE5 1235 aa23.78■■□□□ 1.4
CLN3-225ENST00000566824 RHBDL3P58872 404 aa23.77■■□□□ 1.4
CLN3-225ENST00000566824 GSTO1P78417 241 aa23.77■■□□□ 1.4
CLN3-225ENST00000566824 NFIAQ12857 509 aa23.77■■□□□ 1.4
CLN3-225ENST00000566824 PLEKHM2Q8IWE5 1019 aa23.77■■□□□ 1.4
CLN3-225ENST00000566824 CELF2O95319 508 aaKnown RBP23.76■■□□□ 1.39
CLN3-225ENST00000566824 CYP7A1P22680 504 aa23.76■■□□□ 1.39
CLN3-225ENST00000566824 RASA3Q14644 834 aa23.76■■□□□ 1.39
CLN3-225ENST00000566824 TTF1Q15361 905 aaPredicted RBP23.76■■□□□ 1.39
CLN3-225ENST00000566824 SSC5DA1L4H1 1573 aa23.75■■□□□ 1.39
CLN3-225ENST00000566824 LDHCP07864 332 aa23.75■■□□□ 1.39
CLN3-225ENST00000566824 PDE6AP16499 860 aa23.75■■□□□ 1.39
CLN3-225ENST00000566824 DYNLL1P63167 89 aaKnown RBP23.75■■□□□ 1.39
CLN3-225ENST00000566824 ZFPM1Q8IX07 1006 aa23.75■■□□□ 1.39
CLN3-225ENST00000566824 SLF2Q8IX21 1173 aa23.75■■□□□ 1.39
CLN3-225ENST00000566824 TMEM39BQ9GZU3 492 aa23.75■■□□□ 1.39
CLN3-225ENST00000566824 RFX7Q2KHR2 1363 aa23.74■■□□□ 1.39
CLN3-225ENST00000566824 TCRBV5S4A2TA0A5A2 114 aa23.74■■□□□ 1.39
CLN3-225ENST00000566824 GLRX3O76003 335 aaKnown RBP23.74■■□□□ 1.39
CLN3-225ENST00000566824 MAP3K12Q12852 859 aa23.74■■□□□ 1.39
CLN3-225ENST00000566824 SLC9C2Q5TAH2 1124 aa23.74■■□□□ 1.39
CLN3-225ENST00000566824 SKAP1Q86WV1 359 aa23.74■■□□□ 1.39
CLN3-225ENST00000566824 SH3RF3Q8TEJ3 882 aaPredicted RBP23.74■■□□□ 1.39
CLN3-225ENST00000566824 TEPSINQ96N21 525 aa23.74■■□□□ 1.39
CLN3-225ENST00000566824 FAM198AQ9UFP1 575 aa23.74■■□□□ 1.39
CLN3-225ENST00000566824 WDHD1O75717 1129 aaPredicted RBP23.73■■□□□ 1.39
CLN3-225ENST00000566824 NBPF12Q5TAG4 269 aaPredicted RBP23.73■■□□□ 1.39
CLN3-225ENST00000566824 MIGA1Q8NAN2 632 aa23.73■■□□□ 1.39
CLN3-225ENST00000566824 DDX4Q9NQI0 724 aaKnown RBP23.73■■□□□ 1.39
CLN3-225ENST00000566824 AATFQ9NY61 560 aaKnown RBP eCLIP23.73■■□□□ 1.39
CLN3-225ENST00000566824 FZD1Q9UP38 647 aa23.73■■□□□ 1.39
CLN3-225ENST00000566824 ZNF532Q9HCE3 1301 aa23.72■■□□□ 1.39
CLN3-225ENST00000566824 TMEM88BA6NKF7 163 aa23.72■■□□□ 1.39
CLN3-225ENST00000566824 ERC2O15083 957 aa23.72■■□□□ 1.39
CLN3-225ENST00000566824 MOB2Q70IA6 237 aa23.72■■□□□ 1.39
CLN3-225ENST00000566824 FOCADQ5VW36 1801 aa23.72■■□□□ 1.39
CLN3-225ENST00000566824 ADD2P35612 726 aa23.71■■□□□ 1.39
CLN3-225ENST00000566824 TCP10Q12799 353 aa23.71■■□□□ 1.39
CLN3-225ENST00000566824 TMOD2Q9NZR1 351 aa23.71■■□□□ 1.39
CLN3-225ENST00000566824 AK9Q5TCS8 1911 aa23.71■■□□□ 1.39
CLN3-225ENST00000566824 RGS3P49796 1198 aa23.7■■□□□ 1.38
CLN3-225ENST00000566824 PPP4CP60510 307 aa23.7■■□□□ 1.38
CLN3-225ENST00000566824 FKBP1CQ5VVH2 108 aa23.7■■□□□ 1.38
CLN3-225ENST00000566824 KBTBD3Q8NAB2 608 aa23.7■■□□□ 1.38
CLN3-225ENST00000566824 PRKG1Q13976 671 aa23.69■■□□□ 1.38
CLN3-225ENST00000566824 CCDC136Q96JN2 1154 aa23.69■■□□□ 1.38
CLN3-225ENST00000566824 IDI2Q9BXS1 227 aa23.69■■□□□ 1.38
CLN3-225ENST00000566824 OSBPL3Q9H4L5 887 aa23.69■■□□□ 1.38
CLN3-225ENST00000566824 CREBZFQ9NS37 354 aa23.69■■□□□ 1.38
CLN3-225ENST00000566824 PPP2R3BQ9Y5P8 575 aa23.69■■□□□ 1.38
CLN3-225ENST00000566824 IGSF3O75054 1194 aa23.68■■□□□ 1.38
CLN3-225ENST00000566824 PICALMQ13492 652 aa23.68■■□□□ 1.38
CLN3-225ENST00000566824 TNFAIP1Q13829 316 aa23.68■■□□□ 1.38
CLN3-225ENST00000566824 CENPQQ7L2Z9 268 aaPredicted RBP23.68■■□□□ 1.38
CLN3-225ENST00000566824 SH3BP5LQ7L8J4 393 aa23.68■■□□□ 1.38
CLN3-225ENST00000566824 FAM83AQ86UY5 434 aa23.68■■□□□ 1.38
CLN3-225ENST00000566824 TEX11Q8IYF3 940 aa23.68■■□□□ 1.38
CLN3-225ENST00000566824 RIOK1Q9BRS2 568 aaKnown RBP23.68■■□□□ 1.38
CLN3-225ENST00000566824 GBA2Q9HCG7 927 aaPredicted RBP23.68■■□□□ 1.38
CLN3-225ENST00000566824 TNNI2P48788 182 aa23.67■■□□□ 1.38
CLN3-225ENST00000566824 FAM151AQ8WW52 585 aa23.67■■□□□ 1.38
CLN3-225ENST00000566824 PAPPA2Q9BXP8 1791 aa23.67■■□□□ 1.38
CLN3-225ENST00000566824 SLURP2P0DP57 97 aa23.66■■□□□ 1.38
CLN3-225ENST00000566824 NOL10Q9BSC4 688 aaKnown RBP23.66■■□□□ 1.38
CLN3-225ENST00000566824 ABT1Q9ULW3 272 aaKnown RBP23.66■■□□□ 1.38
CLN3-225ENST00000566824 BAG3O95817 575 aa23.65■■□□□ 1.38
CLN3-225ENST00000566824 SAPCD2Q86UD0 394 aa23.65■■□□□ 1.38
CLN3-225ENST00000566824 LCORLQ8N3X6 602 aa23.65■■□□□ 1.38
CLN3-225ENST00000566824 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.65■■□□□ 1.382e-6■■■■■ 40.7
CLN3-225ENST00000566824 TLL2Q9Y6L7 1015 aa23.65■■□□□ 1.38
CLN3-225ENST00000566824 CEP350Q5VT06 3117 aa23.65■■□□□ 1.38
CLN3-225ENST00000566824 SIPA1L1O43166 1804 aa23.64■■□□□ 1.38
CLN3-225ENST00000566824 OTOFQ9HC10 1997 aa23.64■■□□□ 1.38
CLN3-225ENST00000566824 MAGEB6P1A0A0J9YX57 407 aa23.64■■□□□ 1.38
CLN3-225ENST00000566824 DDTLA6NHG4 134 aaPredicted RBP23.64■■□□□ 1.38
CLN3-225ENST00000566824 UBE2Q2LH0YL09 131 aa23.64■■□□□ 1.38
CLN3-225ENST00000566824 UBE3CQ15386 1083 aa23.64■■□□□ 1.38
CLN3-225ENST00000566824 MAPKAPK5Q8IW41 473 aa23.64■■□□□ 1.38
CLN3-225ENST00000566824 TGFBRAP1Q8WUH2 860 aa23.64■■□□□ 1.38
CLN3-225ENST00000566824 FSD1Q9BTV5 496 aa23.64■■□□□ 1.38
CLN3-225ENST00000566824 PUS7LQ9H0K6 701 aaKnown RBP23.64■■□□□ 1.38
CLN3-225ENST00000566824 ARMT1Q9H993 441 aa23.64■■□□□ 1.38
CLN3-225ENST00000566824 MYH1P12882 1939 aa23.64■■□□□ 1.37
CLN3-225ENST00000566824 RNF113AO15541 343 aaKnown RBP23.63■■□□□ 1.37
CLN3-225ENST00000566824 ENTPD3O75355 529 aa23.63■■□□□ 1.37
CLN3-225ENST00000566824 C2orf69Q8N8R5 385 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms