RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 ZNRF3Q9ULT6 936 aa16.6■□□□□ 0.25
CLK3-209ENST00000562670 LAMB1P07942 1786 aa16.59■□□□□ 0.25
CLK3-209ENST00000562670 MCM2P49736 904 aa16.59■□□□□ 0.25
CLK3-209ENST00000562670 MMP14P50281 582 aa16.59■□□□□ 0.25
CLK3-209ENST00000562670 IFNL3Q8IZI9 196 aa16.59■□□□□ 0.25
CLK3-209ENST00000562670 ZSWIM6Q9HCJ5 1215 aa16.59■□□□□ 0.25
CLK3-209ENST00000562670 ATP8A2Q9NTI2 1148 aa16.59■□□□□ 0.25
CLK3-209ENST00000562670 SLC4A4Q9Y6R1 1079 aa16.59■□□□□ 0.25
CLK3-209ENST00000562670 FOCADQ5VW36 1801 aa16.59■□□□□ 0.25
CLK3-209ENST00000562670 VIL1P09327 827 aaKnown RBP16.58■□□□□ 0.24
CLK3-209ENST00000562670 HMGB1P09429 215 aaKnown RBP16.58■□□□□ 0.24
CLK3-209ENST00000562670 DIXDC1Q155Q3 683 aa16.58■□□□□ 0.24
CLK3-209ENST00000562670 SYT17Q9BSW7 474 aa16.58■□□□□ 0.24
CLK3-209ENST00000562670 NAPBQ9H115 298 aa16.58■□□□□ 0.24
CLK3-209ENST00000562670 AATFQ9NY61 560 aaKnown RBP eCLIP16.58■□□□□ 0.24
CLK3-209ENST00000562670 TTF2Q9UNY4 1162 aaKnown RBP16.58■□□□□ 0.24
CLK3-209ENST00000562670 NAV1Q8NEY1 1877 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 NT5C2P49902 561 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 RSBN1LQ6PCB5 846 aaPredicted RBP16.57■□□□□ 0.24
CLK3-209ENST00000562670 HSCBQ8IWL3 235 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 JDP2Q8WYK2 163 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 FBXW7Q969H0 707 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 TEKT1Q969V4 418 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 JAKMIP1Q96N16 626 aaKnown RBP16.57■□□□□ 0.24
CLK3-209ENST00000562670 TTC14Q96N46 770 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 TBC1D2Q9BYX2 928 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 ALDH8A1Q9H2A2 487 aaPredicted RBP16.57■□□□□ 0.24
CLK3-209ENST00000562670 ANAPC4Q9UJX5 808 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 SERPINA10Q9UK55 444 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 DAGLAQ9Y4D2 1042 aa16.57■□□□□ 0.24
CLK3-209ENST00000562670 ZNF213O14771 459 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 APPP05067 770 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 BTDP43251 543 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 TDO2P48775 406 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 DYNLL1P63167 89 aaKnown RBP16.56■□□□□ 0.24
CLK3-209ENST00000562670 ADCK5Q3MIX3 580 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 AGBL3Q8NEM8 1001 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 ZDHHC15Q96MV8 337 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 GMLQ99445 158 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 KCNQ5Q9NR82 932 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 ARPP21Q9UBL0 812 aaPredicted RBP16.56■□□□□ 0.24
CLK3-209ENST00000562670 MKRN1Q9UHC7 482 aaKnown RBP16.56■□□□□ 0.24
CLK3-209ENST00000562670 CYP46A1Q9Y6A2 500 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 DICER1Q9UPY3 1922 aaKnown RBP16.56■□□□□ 0.24
CLK3-209ENST00000562670 CDK5RAP2Q96SN8 1893 aa16.56■□□□□ 0.24
CLK3-209ENST00000562670 ROBO3Q96MS0 1386 aa16.55■□□□□ 0.24
CLK3-209ENST00000562670 WDR19Q8NEZ3 1342 aa16.55■□□□□ 0.24
CLK3-209ENST00000562670 PRKAB2O43741 272 aa16.55■□□□□ 0.24
CLK3-209ENST00000562670 PCP11498 1178 aaKnown RBP16.55■□□□□ 0.24
CLK3-209ENST00000562670 CASTP20810 708 aaKnown RBP16.55■□□□□ 0.24
CLK3-209ENST00000562670 NEK4P51957 841 aa16.55■□□□□ 0.24
CLK3-209ENST00000562670 RHBDL3P58872 404 aa16.55■□□□□ 0.24
CLK3-209ENST00000562670 SBK1Q52WX2 424 aa16.55■□□□□ 0.24
CLK3-209ENST00000562670 BLOC1S2Q6QNY1 142 aa16.55■□□□□ 0.24
CLK3-209ENST00000562670 RUFY3Q7L099 469 aa16.55■□□□□ 0.24
CLK3-209ENST00000562670 DCP1AQ9NPI6 582 aaPredicted RBP16.55■□□□□ 0.24
CLK3-209ENST00000562670 TAF6LQ9Y6J9 622 aa16.55■□□□□ 0.24
CLK3-209ENST00000562670 E7EWF7 191 aa16.54■□□□□ 0.24
CLK3-209ENST00000562670 K7ELQ4 463 aaPredicted RBP16.54■□□□□ 0.24
CLK3-209ENST00000562670 RPS6KB1P23443 525 aa16.54■□□□□ 0.24
CLK3-209ENST00000562670 CRKP46108 304 aa16.54■□□□□ 0.24
CLK3-209ENST00000562670 STOX1Q6ZVD7 989 aa16.54■□□□□ 0.24
CLK3-209ENST00000562670 FBXL16Q8N461 479 aa16.54■□□□□ 0.24
CLK3-209ENST00000562670 SDR42E1Q8WUS8 393 aa16.54■□□□□ 0.24
CLK3-209ENST00000562670 NEK1Q96PY6 1258 aa16.54■□□□□ 0.24
CLK3-209ENST00000562670 UPF3BQ9BZI7 483 aaKnown RBP16.54■□□□□ 0.24
CLK3-209ENST00000562670 NBPF3Q9H094 633 aa16.54■□□□□ 0.24
CLK3-209ENST00000562670 ADAMTSL1Q8N6G6 1762 aa16.54■□□□□ 0.24
CLK3-209ENST00000562670 FZD9O00144 591 aa16.53■□□□□ 0.24
CLK3-209ENST00000562670 PSMD14O00487 310 aa16.53■□□□□ 0.24
CLK3-209ENST00000562670 SOCS7O14512 581 aa16.53■□□□□ 0.24
CLK3-209ENST00000562670 NPM3O75607 178 aaKnown RBP16.53■□□□□ 0.24
CLK3-209ENST00000562670 CD2BP2O95400 341 aaKnown RBP16.53■□□□□ 0.24
CLK3-209ENST00000562670 RPS12P25398 132 aaKnown RBP16.53■□□□□ 0.24
CLK3-209ENST00000562670 RASSF7Q02833 373 aa16.53■□□□□ 0.24
CLK3-209ENST00000562670 TNIP1Q15025 636 aa16.53■□□□□ 0.24
CLK3-209ENST00000562670 CIAPIN1Q6FI81 312 aa16.53■□□□□ 0.24
CLK3-209ENST00000562670 SH3RF3Q8TEJ3 882 aaPredicted RBP16.53■□□□□ 0.24
CLK3-209ENST00000562670 STAG1Q8WVM7 1258 aa16.53■□□□□ 0.24
CLK3-209ENST00000562670 MXD3Q9BW11 206 aa16.53■□□□□ 0.24
CLK3-209ENST00000562670 RNF41Q9H4P4 317 aaPredicted RBP16.53■□□□□ 0.24
CLK3-209ENST00000562670 ECM29Q5VYK3 1845 aa16.53■□□□□ 0.24
CLK3-209ENST00000562670 LMNB1P20700 586 aa16.52■□□□□ 0.24
CLK3-209ENST00000562670 CXCL9Q07325 125 aa16.52■□□□□ 0.24
CLK3-209ENST00000562670 ANKRD1Q15327 319 aa16.52■□□□□ 0.24
CLK3-209ENST00000562670 APOBEC3HQ6NTF7 200 aaKnown RBP16.52■□□□□ 0.24
CLK3-209ENST00000562670 TBC1D10CQ8IV04 446 aa16.52■□□□□ 0.24
CLK3-209ENST00000562670 KIAA0825Q8IV33 1275 aa16.52■□□□□ 0.24
CLK3-209ENST00000562670 MTMR14Q8NCE2 650 aa16.52■□□□□ 0.24
CLK3-209ENST00000562670 CNNM2Q9H8M5 875 aa16.52■□□□□ 0.24
CLK3-209ENST00000562670 TAOK2Q9UL54 1235 aa16.52■□□□□ 0.24
CLK3-209ENST00000562670 COL2A1P02458 1487 aaPredicted RBP16.52■□□□□ 0.23
CLK3-209ENST00000562670 FLT1P17948 1338 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 GOLGB1Q14789 3259 aaKnown RBP16.51■□□□□ 0.23
CLK3-209ENST00000562670 RAD17O75943 681 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 FGRP09769 529 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 PRELPP51888 382 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 HAND2P61296 217 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 PPARAQ07869 468 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 AKNAD1Q5T1N1 836 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms