RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 TCP10L2B9ZVM9 353 aa20.34■□□□□ 0.85
CLK3-207ENST00000562389 BTDP43251 543 aa20.34■□□□□ 0.85
CLK3-207ENST00000562389 PRAMEF18Q5VWM3 479 aa20.34■□□□□ 0.85
CLK3-207ENST00000562389 NAA16Q6N069 864 aaPredicted RBP20.34■□□□□ 0.85
CLK3-207ENST00000562389 TMED8Q6PL24 325 aaPredicted RBP20.34■□□□□ 0.85
CLK3-207ENST00000562389 FAM83AQ86UY5 434 aa20.34■□□□□ 0.85
CLK3-207ENST00000562389 ABT1Q9ULW3 272 aaKnown RBP20.34■□□□□ 0.85
CLK3-207ENST00000562389 CNTNAP1P78357 1384 aa20.34■□□□□ 0.85
CLK3-207ENST00000562389 RFX7Q2KHR2 1363 aa20.34■□□□□ 0.85
CLK3-207ENST00000562389 SALL3Q9BXA9 1300 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 RASSF10A6NK89 507 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 GOLIM4O00461 696 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 IDH1O75874 414 aaKnown RBP20.33■□□□□ 0.85
CLK3-207ENST00000562389 CENPBP07199 599 aaPredicted RBP20.33■□□□□ 0.85
CLK3-207ENST00000562389 NF2P35240 595 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 CACNB3P54284 484 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 FKBP1BP68106 108 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 MAP3K12Q12852 859 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 SAPCD2Q86UD0 394 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 C2orf69Q8N8R5 385 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 USP40Q9NVE5 1235 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 PAG1Q9NWQ8 432 aa20.33■□□□□ 0.85
CLK3-207ENST00000562389 SSC5DA1L4H1 1573 aa20.33■□□□□ 0.84
CLK3-207ENST00000562389 RPAP1Q9BWH6 1393 aaPredicted RBP20.33■□□□□ 0.84
CLK3-207ENST00000562389 MAP4K4O95819 1239 aaPredicted RBP20.32■□□□□ 0.84
CLK3-207ENST00000562389 DNAJC5GQ8N7S2 189 aa20.32■□□□□ 0.84
CLK3-207ENST00000562389 OTUD7AQ8TE49 926 aaPredicted RBP20.32■□□□□ 0.84
CLK3-207ENST00000562389 CDK5RAP2Q96SN8 1893 aa20.31■□□□□ 0.84
CLK3-207ENST00000562389 MX1P20591 662 aa20.31■□□□□ 0.84
CLK3-207ENST00000562389 RHBDL3P58872 404 aa20.31■□□□□ 0.84
CLK3-207ENST00000562389 KLRG1Q96E93 195 aa20.31■□□□□ 0.84
CLK3-207ENST00000562389 EDC3Q96F86 508 aaKnown RBP20.31■□□□□ 0.84
CLK3-207ENST00000562389 HHIPL1Q96JK4 782 aa20.31■□□□□ 0.84
CLK3-207ENST00000562389 TEPSINQ96N21 525 aa20.31■□□□□ 0.84
CLK3-207ENST00000562389 IDI2Q9BXS1 227 aa20.31■□□□□ 0.84
CLK3-207ENST00000562389 TMEM39BQ9GZU3 492 aa20.31■□□□□ 0.84
CLK3-207ENST00000562389 FOCADQ5VW36 1801 aa20.31■□□□□ 0.84
CLK3-207ENST00000562389 ERC2O15083 957 aa20.3■□□□□ 0.84
CLK3-207ENST00000562389 NUCB1Q02818 461 aa20.3■□□□□ 0.84
CLK3-207ENST00000562389 NFIAQ12857 509 aa20.3■□□□□ 0.84
CLK3-207ENST00000562389 SUPT20HL1Q3ZLR7 823 aa20.3■□□□□ 0.84
CLK3-207ENST00000562389 TSHZ3Q63HK5 1081 aa20.3■□□□□ 0.84
CLK3-207ENST00000562389 ADGRA1Q86SQ6 560 aa20.3■□□□□ 0.84
CLK3-207ENST00000562389 MAGEB6Q8N7X4 407 aa20.3■□□□□ 0.84
CLK3-207ENST00000562389 PI4K2BQ8TCG2 481 aa20.3■□□□□ 0.84
CLK3-207ENST00000562389 NOL10Q9BSC4 688 aaKnown RBP20.3■□□□□ 0.84
CLK3-207ENST00000562389 WDHD1O75717 1129 aaPredicted RBP20.29■□□□□ 0.84
CLK3-207ENST00000562389 GLRX3O76003 335 aaKnown RBP20.29■□□□□ 0.84
CLK3-207ENST00000562389 BAG3O95817 575 aa20.29■□□□□ 0.84
CLK3-207ENST00000562389 CYP7A1P22680 504 aa20.29■□□□□ 0.84
CLK3-207ENST00000562389 PPP4CP60510 307 aa20.29■□□□□ 0.84
CLK3-207ENST00000562389 DEFB115Q30KQ5 88 aa20.29■□□□□ 0.84
CLK3-207ENST00000562389 NBPF12Q5TAG4 269 aaPredicted RBP20.29■□□□□ 0.84
CLK3-207ENST00000562389 B4GALNT3Q6L9W6 998 aa20.29■□□□□ 0.84
CLK3-207ENST00000562389 CHD1LQ86WJ1 897 aa20.29■□□□□ 0.84
CLK3-207ENST00000562389 FAM151AQ8WW52 585 aa20.29■□□□□ 0.84
CLK3-207ENST00000562389 LNPKQ9C0E8 428 aa20.29■□□□□ 0.84
CLK3-207ENST00000562389 FAM198AQ9UFP1 575 aa20.29■□□□□ 0.84
CLK3-207ENST00000562389 MKRN1Q9UHC7 482 aaKnown RBP20.29■□□□□ 0.84
CLK3-207ENST00000562389 AK9Q5TCS8 1911 aa20.28■□□□□ 0.84
CLK3-207ENST00000562389 ENTPD3O75355 529 aa20.28■□□□□ 0.84
CLK3-207ENST00000562389 NPM3O75607 178 aaKnown RBP20.28■□□□□ 0.84
CLK3-207ENST00000562389 PDE6AP16499 860 aa20.28■□□□□ 0.84
CLK3-207ENST00000562389 PLCG2P16885 1265 aa20.28■□□□□ 0.84
CLK3-207ENST00000562389 HUNKP57058 714 aa20.28■□□□□ 0.84
CLK3-207ENST00000562389 AATFQ9NY61 560 aaKnown RBP eCLIP20.28■□□□□ 0.84
CLK3-207ENST00000562389 STAP2Q9UGK3 403 aa20.28■□□□□ 0.84
CLK3-207ENST00000562389 RGS3P49796 1198 aa20.27■□□□□ 0.84
CLK3-207ENST00000562389 MAP3K11Q16584 847 aa20.27■□□□□ 0.84
CLK3-207ENST00000562389 SLC9C2Q5TAH2 1124 aa20.27■□□□□ 0.84
CLK3-207ENST00000562389 ARMC9Q7Z3E5 817 aa20.27■□□□□ 0.84
CLK3-207ENST00000562389 CERS3Q8IU89 383 aa20.27■□□□□ 0.84
CLK3-207ENST00000562389 CDAN1Q8IWY9 1227 aa20.27■□□□□ 0.84
CLK3-207ENST00000562389 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.27■□□□□ 0.84
CLK3-207ENST00000562389 THSD7BQ9C0I4 1608 aa20.27■□□□□ 0.83
CLK3-207ENST00000562389 PPP1R12BO60237 982 aaPredicted RBP20.26■□□□□ 0.83
CLK3-207ENST00000562389 PDE1AP54750 535 aa20.26■□□□□ 0.83
CLK3-207ENST00000562389 TCP10Q12799 353 aa20.26■□□□□ 0.83
CLK3-207ENST00000562389 TTLL12Q14166 644 aaPredicted RBP20.26■□□□□ 0.83
CLK3-207ENST00000562389 SH3RF3Q8TEJ3 882 aaPredicted RBP20.26■□□□□ 0.83
CLK3-207ENST00000562389 DDX4Q9NQI0 724 aaKnown RBP20.26■□□□□ 0.83
CLK3-207ENST00000562389 OTOFQ9HC10 1997 aa20.26■□□□□ 0.83
CLK3-207ENST00000562389 COL2A1P02458 1487 aaPredicted RBP20.25■□□□□ 0.83
CLK3-207ENST00000562389 TCRBV5S4A2TA0A5A2 114 aa20.25■□□□□ 0.83
CLK3-207ENST00000562389 ADD2P35612 726 aa20.25■□□□□ 0.83
CLK3-207ENST00000562389 MOB2Q70IA6 237 aa20.25■□□□□ 0.83
CLK3-207ENST00000562389 TEX11Q8IYF3 940 aa20.25■□□□□ 0.83
CLK3-207ENST00000562389 HOOK2Q96ED9 719 aa20.25■□□□□ 0.83
CLK3-207ENST00000562389 ZNF532Q9HCE3 1301 aa20.25■□□□□ 0.83
CLK3-207ENST00000562389 ECE1P42892 770 aa20.24■□□□□ 0.83
CLK3-207ENST00000562389 VEGFBP49765 207 aa20.24■□□□□ 0.83
CLK3-207ENST00000562389 PICALMQ13492 652 aa20.24■□□□□ 0.83
CLK3-207ENST00000562389 PRKG1Q13976 671 aa20.24■□□□□ 0.83
CLK3-207ENST00000562389 ZSCAN25Q6NSZ9 544 aa20.24■□□□□ 0.83
CLK3-207ENST00000562389 RGMBQ6NW40 437 aa20.24■□□□□ 0.83
CLK3-207ENST00000562389 KBTBD3Q8NAB2 608 aa20.24■□□□□ 0.83
CLK3-207ENST00000562389 MIGA1Q8NAN2 632 aa20.24■□□□□ 0.83
CLK3-207ENST00000562389 ANGEL1Q9UNK9 670 aaKnown RBP20.24■□□□□ 0.83
CLK3-207ENST00000562389 UBE2Q2LH0YL09 131 aa20.23■□□□□ 0.83
CLK3-207ENST00000562389 DYNLL1P63167 89 aaKnown RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms