RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 FAM163AQ96GL9 167 aaPredicted RBP17.42■□□□□ 0.38
USP3-221ENST00000561442 TMOD2Q9NZR1 351 aa17.42■□□□□ 0.38
USP3-221ENST00000561442 TTC41PQ6P2S7 1318 aa17.42■□□□□ 0.38
USP3-221ENST00000561442 ERC2O15083 957 aa17.41■□□□□ 0.38
USP3-221ENST00000561442 CYP7A1P22680 504 aa17.41■□□□□ 0.38
USP3-221ENST00000561442 PDE1AP54750 535 aa17.41■□□□□ 0.38
USP3-221ENST00000561442 RASA3Q14644 834 aa17.41■□□□□ 0.38
USP3-221ENST00000561442 CST9Q5W186 159 aa17.41■□□□□ 0.38
USP3-221ENST00000561442 ADGRA1Q86SQ6 560 aa17.41■□□□□ 0.38
USP3-221ENST00000561442 CEP350Q5VT06 3117 aa17.41■□□□□ 0.38
USP3-221ENST00000561442 AKAP11Q9UKA4 1901 aa17.41■□□□□ 0.38
USP3-221ENST00000561442 GPR75-ASB3A0A0A6YYF3 556 aa17.4■□□□□ 0.38
USP3-221ENST00000561442 TMEM88BA6NKF7 163 aa17.4■□□□□ 0.38
USP3-221ENST00000561442 GLRX3O76003 335 aaKnown RBP17.4■□□□□ 0.38
USP3-221ENST00000561442 NFIAQ12857 509 aa17.4■□□□□ 0.38
USP3-221ENST00000561442 AATFQ9NY61 560 aaKnown RBP eCLIP17.4■□□□□ 0.38
USP3-221ENST00000561442 PDE6AP16499 860 aa17.39■□□□□ 0.37
USP3-221ENST00000561442 TNFAIP1Q13829 316 aa17.39■□□□□ 0.37
USP3-221ENST00000561442 SLFNL1Q499Z3 407 aa17.39■□□□□ 0.37
USP3-221ENST00000561442 SLC9C2Q5TAH2 1124 aa17.39■□□□□ 0.37
USP3-221ENST00000561442 CDAN1Q8IWY9 1227 aa17.39■□□□□ 0.37
USP3-221ENST00000561442 MIGA1Q8NAN2 632 aa17.39■□□□□ 0.37
USP3-221ENST00000561442 NOL10Q9BSC4 688 aaKnown RBP17.39■□□□□ 0.37
USP3-221ENST00000561442 TMEM39BQ9GZU3 492 aa17.39■□□□□ 0.37
USP3-221ENST00000561442 STAP2Q9UGK3 403 aa17.39■□□□□ 0.37
USP3-221ENST00000561442 CNTNAP1P78357 1384 aa17.39■□□□□ 0.37
USP3-221ENST00000561442 CHGBP05060 677 aa17.38■□□□□ 0.37
USP3-221ENST00000561442 TNNI2P48788 182 aa17.38■□□□□ 0.37
USP3-221ENST00000561442 DYNLL1P63167 89 aaKnown RBP17.38■□□□□ 0.37
USP3-221ENST00000561442 TCP10Q12799 353 aa17.38■□□□□ 0.37
USP3-221ENST00000561442 SH3RF3Q8TEJ3 882 aaPredicted RBP17.38■□□□□ 0.37
USP3-221ENST00000561442 CCDC136Q96JN2 1154 aa17.38■□□□□ 0.37
USP3-221ENST00000561442 ZNF532Q9HCE3 1301 aa17.38■□□□□ 0.37
USP3-221ENST00000561442 BAG3O95817 575 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 PDE4AP27815 886 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 RHBDL3P58872 404 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 PICALMQ13492 652 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 PRKG1Q13976 671 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 NBPF12Q5TAG4 269 aaPredicted RBP17.37■□□□□ 0.37
USP3-221ENST00000561442 PLEKHM2Q8IWE5 1019 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 TEX11Q8IYF3 940 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.37■□□□□ 0.371e-6■■■■□ 21.2
USP3-221ENST00000561442 CREBZFQ9NS37 354 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 FAM198AQ9UFP1 575 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 ABT1Q9ULW3 272 aaKnown RBP17.37■□□□□ 0.37
USP3-221ENST00000561442 PPP2R3BQ9Y5P8 575 aa17.37■□□□□ 0.37
USP3-221ENST00000561442 IGSF3O75054 1194 aa17.36■□□□□ 0.37
USP3-221ENST00000561442 WDHD1O75717 1129 aaPredicted RBP17.36■□□□□ 0.37
USP3-221ENST00000561442 RGS3P49796 1198 aa17.36■□□□□ 0.37
USP3-221ENST00000561442 TTLL12Q14166 644 aaPredicted RBP17.36■□□□□ 0.37
USP3-221ENST00000561442 FKBP1CQ5VVH2 108 aa17.36■□□□□ 0.37
USP3-221ENST00000561442 ZFPM1Q8IX07 1006 aa17.36■□□□□ 0.37
USP3-221ENST00000561442 KBTBD3Q8NAB2 608 aa17.36■□□□□ 0.37
USP3-221ENST00000561442 GBA2Q9HCG7 927 aaPredicted RBP17.36■□□□□ 0.37
USP3-221ENST00000561442 FZD1Q9UP38 647 aa17.36■□□□□ 0.37
USP3-221ENST00000561442 TCRBV5S4A2TA0A5A2 114 aa17.35■□□□□ 0.37
USP3-221ENST00000561442 NF2P35240 595 aa17.35■□□□□ 0.37
USP3-221ENST00000561442 ADD2P35612 726 aa17.35■□□□□ 0.37
USP3-221ENST00000561442 PPP4CP60510 307 aa17.35■□□□□ 0.37
USP3-221ENST00000561442 MOB2Q70IA6 237 aa17.35■□□□□ 0.37
USP3-221ENST00000561442 CENPQQ7L2Z9 268 aaPredicted RBP17.35■□□□□ 0.37
USP3-221ENST00000561442 FAM83AQ86UY5 434 aa17.35■□□□□ 0.37
USP3-221ENST00000561442 C2orf69Q8N8R5 385 aa17.35■□□□□ 0.37
USP3-221ENST00000561442 TEPSINQ96N21 525 aa17.35■□□□□ 0.37
USP3-221ENST00000561442 DDX4Q9NQI0 724 aaKnown RBP17.35■□□□□ 0.37
USP3-221ENST00000561442 MAST2Q6P0Q8 1798 aa17.35■□□□□ 0.37
USP3-221ENST00000561442 RFX7Q2KHR2 1363 aa17.34■□□□□ 0.37
USP3-221ENST00000561442 SUPT20HL1Q3ZLR7 823 aa17.34■□□□□ 0.37
USP3-221ENST00000561442 FAM151AQ8WW52 585 aa17.34■□□□□ 0.37
USP3-221ENST00000561442 FSD1Q9BTV5 496 aa17.34■□□□□ 0.37
USP3-221ENST00000561442 IDI2Q9BXS1 227 aa17.34■□□□□ 0.37
USP3-221ENST00000561442 SSC5DA1L4H1 1573 aa17.33■□□□□ 0.37
USP3-221ENST00000561442 MAGEB6P1A0A0J9YX57 407 aa17.33■□□□□ 0.36
USP3-221ENST00000561442 PLCG2P16885 1265 aa17.33■□□□□ 0.36
USP3-221ENST00000561442 HUNKP57058 714 aa17.33■□□□□ 0.36
USP3-221ENST00000561442 ZSCAN25Q6NSZ9 544 aa17.33■□□□□ 0.36
USP3-221ENST00000561442 TMED8Q6PL24 325 aaPredicted RBP17.33■□□□□ 0.36
USP3-221ENST00000561442 TGFBRAP1Q8WUH2 860 aa17.33■□□□□ 0.36
USP3-221ENST00000561442 MKRN1Q9UHC7 482 aaKnown RBP17.33■□□□□ 0.36
USP3-221ENST00000561442 TLL2Q9Y6L7 1015 aa17.33■□□□□ 0.36
USP3-221ENST00000561442 MYH2Q9UKX2 1941 aa17.33■□□□□ 0.36
USP3-221ENST00000561442 TRIM6-TRIM34B2RNG4 842 aa17.32■□□□□ 0.36
USP3-221ENST00000561442 UBE2Q2LH0YL09 131 aa17.32■□□□□ 0.36
USP3-221ENST00000561442 ENTPD3O75355 529 aa17.32■□□□□ 0.36
USP3-221ENST00000561442 PAXIP1Q6ZW49 1069 aaPredicted RBP17.32■□□□□ 0.36
USP3-221ENST00000561442 SAPCD2Q86UD0 394 aa17.32■□□□□ 0.36
USP3-221ENST00000561442 SKAP1Q86WV1 359 aa17.32■□□□□ 0.36
USP3-221ENST00000561442 MAPKAPK5Q8IW41 473 aa17.32■□□□□ 0.36
USP3-221ENST00000561442 ZSCAN29Q8IWY8 852 aaPredicted RBP17.32■□□□□ 0.36
USP3-221ENST00000561442 RIOK1Q9BRS2 568 aaKnown RBP17.32■□□□□ 0.36
USP3-221ENST00000561442 OSBPL3Q9H4L5 887 aa17.32■□□□□ 0.36
USP3-221ENST00000561442 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.32■□□□□ 0.36
USP3-221ENST00000561442 POLR2AP24928 1970 aaKnown RBP17.31■□□□□ 0.36
USP3-221ENST00000561442 RNF113AO15541 343 aaKnown RBP17.31■□□□□ 0.36
USP3-221ENST00000561442 MBD4O95243 580 aa17.31■□□□□ 0.36
USP3-221ENST00000561442 UBE3CQ15386 1083 aa17.31■□□□□ 0.36
USP3-221ENST00000561442 SH3BP5LQ7L8J4 393 aa17.31■□□□□ 0.36
USP3-221ENST00000561442 LCORLQ8N3X6 602 aa17.31■□□□□ 0.36
USP3-221ENST00000561442 EVI5LQ96CN4 794 aa17.31■□□□□ 0.36
USP3-221ENST00000561442 ARMT1Q9H993 441 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms