RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 IL27Q8NEV9 243 aa13.36□□□□□ -0.27
USP3-218ENST00000560202 NOL10Q9BSC4 688 aaKnown RBP13.36□□□□□ -0.27
USP3-218ENST00000560202 SYT17Q9BSW7 474 aa13.36□□□□□ -0.27
USP3-218ENST00000560202 UPF3BQ9BZI7 483 aaKnown RBP13.36□□□□□ -0.27
USP3-218ENST00000560202 CRNKL1Q9BZJ0 848 aaKnown RBP13.36□□□□□ -0.27
USP3-218ENST00000560202 NAPBQ9H115 298 aa13.36□□□□□ -0.27
USP3-218ENST00000560202 ZNRF3Q9ULT6 936 aa13.36□□□□□ -0.27
USP3-218ENST00000560202 GAKO14976 1311 aa13.35□□□□□ -0.27
USP3-218ENST00000560202 GPR75-ASB3A0A0A6YYF3 556 aa13.35□□□□□ -0.27
USP3-218ENST00000560202 ZNF213O14771 459 aa13.35□□□□□ -0.27
USP3-218ENST00000560202 CD2BP2O95400 341 aaKnown RBP13.35□□□□□ -0.27
USP3-218ENST00000560202 CASTP20810 708 aaKnown RBP13.35□□□□□ -0.27
USP3-218ENST00000560202 CERS3Q8IU89 383 aa13.35□□□□□ -0.27
USP3-218ENST00000560202 HSCBQ8IWL3 235 aa13.35□□□□□ -0.27
USP3-218ENST00000560202 SDR42E1Q8WUS8 393 aa13.35□□□□□ -0.27
USP3-218ENST00000560202 ZSWIM6Q9HCJ5 1215 aa13.35□□□□□ -0.27
USP3-218ENST00000560202 DAXXQ9UER7 740 aaPredicted RBP13.35□□□□□ -0.27
USP3-218ENST00000560202 COL4A5P29400 1685 aa13.35□□□□□ -0.27
USP3-218ENST00000560202 CCDC88AQ3V6T2 1871 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 BTDP43251 543 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 SLC4A3P48751 1232 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 TDO2P48775 406 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 HAND2P61296 217 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 NEK1Q96PY6 1258 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 DAGLAQ9Y4D2 1042 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 E7EWF7 191 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 RAD17O75943 681 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 SCNN1DP51172 638 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 GIMAP6Q6P9H5 292 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 STOX1Q6ZVD7 989 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 RUFY3Q7L099 469 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 KIAA0825Q8IV33 1275 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 SH3RF3Q8TEJ3 882 aaPredicted RBP13.34□□□□□ -0.27
USP3-218ENST00000560202 JDP2Q8WYK2 163 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 ATP8A2Q9NTI2 1148 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 CYP46A1Q9Y6A2 500 aa13.34□□□□□ -0.27
USP3-218ENST00000560202 FER1L6Q2WGJ9 1857 aa13.33□□□□□ -0.27
USP3-218ENST00000560202 VIL1P09327 827 aaKnown RBP13.33□□□□□ -0.28
USP3-218ENST00000560202 CPA1P15085 419 aa13.33□□□□□ -0.28
USP3-218ENST00000560202 RASSF7Q02833 373 aa13.33□□□□□ -0.28
USP3-218ENST00000560202 RSBN1LQ6PCB5 846 aaPredicted RBP13.33□□□□□ -0.28
USP3-218ENST00000560202 BLOC1S2Q6QNY1 142 aa13.33□□□□□ -0.28
USP3-218ENST00000560202 HHIPL2Q6UWX4 724 aa13.33□□□□□ -0.28
USP3-218ENST00000560202 MRIQ9BWK5 157 aa13.33□□□□□ -0.28
USP3-218ENST00000560202 SCN9AQ15858 1988 aa13.33□□□□□ -0.28
USP3-218ENST00000560202 MYO3BQ8WXR4 1341 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 PSMD14O00487 310 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 PLCG2P16885 1265 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 RPS6KB1P23443 525 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 CRKP46108 304 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 MCM2P49736 904 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 HDLBPQ00341 1268 aaKnown RBP13.32□□□□□ -0.28
USP3-218ENST00000560202 NBR1Q14596 966 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 TEKT1Q969V4 418 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 TTC14Q96N46 770 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 NBPF3Q9H094 633 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 DCP1AQ9NPI6 582 aaPredicted RBP13.32□□□□□ -0.28
USP3-218ENST00000560202 PDRG1Q9NUG6 133 aa13.32□□□□□ -0.28
USP3-218ENST00000560202 K7ELQ4 463 aaPredicted RBP13.31□□□□□ -0.28
USP3-218ENST00000560202 HMGB1P09429 215 aaKnown RBP13.31□□□□□ -0.28
USP3-218ENST00000560202 USP5P45974 858 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 PRELPP51888 382 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 RHBDL3P58872 404 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 CXCL9Q07325 125 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 COL9A3Q14050 684 aaPredicted RBP13.31□□□□□ -0.28
USP3-218ENST00000560202 ARHGAP27Q6ZUM4 889 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 ARFGEF1Q9Y6D6 1849 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 PPARAQ07869 468 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 CIAPIN1Q6FI81 312 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 TBC1D10CQ8IV04 446 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 TEX11Q8IYF3 940 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 TGFBRAP1Q8WUH2 860 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 ZDHHC15Q96MV8 337 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 MKRN1Q9UHC7 482 aaKnown RBP13.31□□□□□ -0.28
USP3-218ENST00000560202 SERPINA10Q9UK55 444 aa13.31□□□□□ -0.28
USP3-218ENST00000560202 ZNF646O15015 1829 aaPredicted RBP13.3□□□□□ -0.28
USP3-218ENST00000560202 MINDY4BA8MYZ0 360 aa13.3□□□□□ -0.28
USP3-218ENST00000560202 USP17L12C9JPN9 530 aa13.3□□□□□ -0.28
USP3-218ENST00000560202 USP17L21D6R901 530 aa13.3□□□□□ -0.28
USP3-218ENST00000560202 AK2P54819 239 aa13.3□□□□□ -0.28
USP3-218ENST00000560202 CTDSPL2Q05D32 466 aa13.3□□□□□ -0.28
USP3-218ENST00000560202 APOBEC3HQ6NTF7 200 aaKnown RBP13.3□□□□□ -0.28
USP3-218ENST00000560202 CTR9Q6PD62 1173 aa13.3□□□□□ -0.28
USP3-218ENST00000560202 DHX32Q7L7V1 743 aaKnown RBP13.3□□□□□ -0.28
USP3-218ENST00000560202 GMLQ99445 158 aa13.3□□□□□ -0.28
USP3-218ENST00000560202 ANAPC4Q9UJX5 808 aa13.3□□□□□ -0.28
USP3-218ENST00000560202 MYH2Q9UKX2 1941 aa13.29□□□□□ -0.28
USP3-218ENST00000560202 RBM5P52756 815 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP3-218ENST00000560202 TRDNQ13061 729 aa13.29□□□□□ -0.28
USP3-218ENST00000560202 SBK1Q52WX2 424 aa13.29□□□□□ -0.28
USP3-218ENST00000560202 AKNAD1Q5T1N1 836 aa13.29□□□□□ -0.28
USP3-218ENST00000560202 AGBL3Q8NEM8 1001 aa13.29□□□□□ -0.28
USP3-218ENST00000560202 NCOA7Q8NI08 942 aa13.29□□□□□ -0.28
USP3-218ENST00000560202 ALDH8A1Q9H2A2 487 aaPredicted RBP13.29□□□□□ -0.28
USP3-218ENST00000560202 USP40Q9NVE5 1235 aa13.29□□□□□ -0.28
USP3-218ENST00000560202 MCM9Q9NXL9 1143 aa13.29□□□□□ -0.28
USP3-218ENST00000560202 ARPP21Q9UBL0 812 aaPredicted RBP13.29□□□□□ -0.28
USP3-218ENST00000560202 ZBTB12Q9Y330 459 aaPredicted RBP13.29□□□□□ -0.28
USP3-218ENST00000560202 CYP2D7A0A087X1C5 515 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 EXOSC10Q01780 885 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms