RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 MLANAQ16655 118 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 SEZ6L2Q6UXD5 910 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 VN1R5Q7Z5H4 357 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 FBXO33Q7Z6M2 555 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 VTI1AQ96AJ9 217 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 MRRFQ96E11 262 aaKnown RBP2.75□□□□□ -1.97
USP3-209ENST00000558925 LIN37Q96GY3 246 aaPredicted RBP2.75□□□□□ -1.97
USP3-209ENST00000558925 ASB16Q96NS5 453 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 SETDB2Q96T68 719 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 USP26Q9BXU7 913 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 SEMA6CQ9H3T2 930 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 RNF19AQ9NV58 838 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 FAM53CQ9NYF3 392 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 CNTN3Q9P232 1028 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 KANSL3Q9P2N6 904 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 RAPGEFL1Q9UHV5 662 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 DCTN4Q9UJW0 460 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 ACTL7BQ9Y614 415 aa2.75□□□□□ -1.97
USP3-209ENST00000558925 FZD6O60353 706 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 IGSF3O75054 1194 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 P4HBP07237 508 aaKnown RBP2.74□□□□□ -1.97
USP3-209ENST00000558925 CTSBP07858 339 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 C1QTNF9P0C862 333 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 NPR3P17342 541 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 EIF1AXP47813 144 aaKnown RBP2.74□□□□□ -1.97
USP3-209ENST00000558925 C19orf57Q0VDD7 668 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 DUSP27Q5VZP5 1158 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 TMC7Q7Z402 723 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 NCAPG2Q86XI2 1143 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 FAM181AQ8N9Y4 354 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 NRSN2Q9GZP1 204 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 CYP4F12Q9HCS2 524 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 PRDM7Q9NQW5 492 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 FAM105AQ9NUU6 356 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 DZANK1Q9NVP4 752 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 TMEM63CQ9P1W3 806 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 SALL4Q9UJQ4 1053 aa2.74□□□□□ -1.97
USP3-209ENST00000558925 GPR182O15218 404 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 FAM13AO94988 1023 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 IGHA2P01877 340 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 ADH5P11766 374 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 RAB6AP20340 208 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 CTSWP56202 376 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 CABP4P57796 275 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 EXOSC6Q5RKV6 272 aaKnown RBP2.73□□□□□ -1.97
USP3-209ENST00000558925 TTC39BQ5VTQ0 682 aaPredicted RBP2.73□□□□□ -1.97
USP3-209ENST00000558925 FYB2Q5VWT5 728 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 AMIGO3Q86WK7 504 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 ZSWIM9Q86XI8 627 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 STK11IPQ8N1F8 1099 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 ZSCAN18Q8TBC5 510 aaPredicted RBP2.73□□□□□ -1.97
USP3-209ENST00000558925 ACSS3Q9H6R3 686 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 IGSF5Q9NSI5 407 aa2.73□□□□□ -1.97
USP3-209ENST00000558925 ABI2Q9NYB9 513 aaPredicted RBP2.73□□□□□ -1.97
USP3-209ENST00000558925 PITPNM2Q9BZ72 1349 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 A6NHS1 94 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 PDE2AO00408 941 aaPredicted RBP2.72□□□□□ -1.97
USP3-209ENST00000558925 TREHO43280 583 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 RECKO95980 971 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 ERCC3P19447 782 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 HOXA5P20719 270 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 AAMPQ13685 434 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 OGFOD3Q6PK18 319 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 PRR23BQ6ZRT6 265 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 SYDE1Q6ZW31 735 aaPredicted RBP2.72□□□□□ -1.97
USP3-209ENST00000558925 FLAD1Q8NFF5 587 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 PI4K2BQ8TCG2 481 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 FAM161BQ96MY7 647 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 RBCK1Q9BYM8 510 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 KCNK12Q9HB15 430 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 LGR6Q9HBX8 967 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 STIM2Q9P246 746 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 BRPF3Q9ULD4 1205 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 WWC3Q9ULE0 1092 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 POLIQ9UNA4 740 aa2.72□□□□□ -1.97
USP3-209ENST00000558925 NDUFB5O43674 189 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 PDGFAP04085 211 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 ZAP70P43403 619 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 MAPK8P45983 427 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 CYP27A1Q02318 531 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 DNM1Q05193 864 aaKnown RBP2.71□□□□□ -1.98
USP3-209ENST00000558925 FMR1Q06787 632 aaKnown RBP eCLIP2.71□□□□□ -1.98
USP3-209ENST00000558925 KRTAP1-1Q07627 177 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 IKBKEQ14164 716 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 DSC3Q14574 896 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 EAPPQ56P03 285 aaPredicted RBP2.71□□□□□ -1.98
USP3-209ENST00000558925 ANKLE2Q86XL3 938 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 ZSCAN29Q8IWY8 852 aaPredicted RBP2.71□□□□□ -1.98
USP3-209ENST00000558925 C1orf127Q8N9H9 656 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 TMC1Q8TDI8 760 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 GPR152Q8TDT2 470 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 EDEM1Q92611 657 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 MISP3Q96FF7 219 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 PLAGL2Q9UPG8 496 aa2.71□□□□□ -1.98
USP3-209ENST00000558925 NPIPB6E9PJ23 425 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 ECEL1O95672 775 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 LDHBP07195 334 aaKnown RBP2.7□□□□□ -1.98
USP3-209ENST00000558925 ESRRAP11474 423 aaPredicted RBP2.7□□□□□ -1.98
USP3-209ENST00000558925 ARL4DP49703 201 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 PRKCQQ04759 706 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms