RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 PTPN12Q05209 780 aaKnown RBP5.57□□□□□ -1.52
VPS13C-205ENST00000558088 RPS26P11Q5JNZ5 115 aaPredicted RBP5.57□□□□□ -1.52
VPS13C-205ENST00000558088 OGFOD3Q6PK18 319 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 TMC1Q8TDI8 760 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 MISP3Q96FF7 219 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 ATXN3LQ9H3M9 355 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 NPHS2Q9NP85 383 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 TRAK1Q9UPV9 953 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 USTQ9Y2C2 406 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 USPL1Q5W0Q7 1092 aa5.56□□□□□ -1.52
VPS13C-205ENST00000558088 ARHGAP27Q6ZUM4 889 aa5.56□□□□□ -1.52
VPS13C-205ENST00000558088 CITED4Q96RK1 184 aa5.56□□□□□ -1.52
VPS13C-205ENST00000558088 WDR18Q9BV38 432 aa5.56□□□□□ -1.52
VPS13C-205ENST00000558088 KRTAP4-7Q9BYR0 210 aa5.56□□□□□ -1.52
VPS13C-205ENST00000558088 GSX1Q9H4S2 264 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-205ENST00000558088 LGR6Q9HBX8 967 aa5.56□□□□□ -1.52
VPS13C-205ENST00000558088 ECEL1O95672 775 aa5.55□□□□□ -1.52
VPS13C-205ENST00000558088 PRPF40BQ6NWY9 871 aaKnown RBP5.55□□□□□ -1.52
VPS13C-205ENST00000558088 NFXL1Q6ZNB6 911 aa5.55□□□□□ -1.52
VPS13C-205ENST00000558088 POU5F2Q8N7G0 328 aa5.55□□□□□ -1.52
VPS13C-205ENST00000558088 BCL7CQ8WUZ0 217 aaPredicted RBP5.55□□□□□ -1.52
VPS13C-205ENST00000558088 DNAJC25Q9H1X3 360 aa5.55□□□□□ -1.52
VPS13C-205ENST00000558088 C1GALT1Q9NS00 363 aa5.55□□□□□ -1.52
VPS13C-205ENST00000558088 PPP4R2Q9NY27 417 aa5.55□□□□□ -1.52
VPS13C-205ENST00000558088 CARNS1A5YM72 827 aa5.54□□□□□ -1.52
VPS13C-205ENST00000558088 DYNC1LI2O43237 492 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-205ENST00000558088 ID3Q02535 119 aa5.54□□□□□ -1.52
VPS13C-205ENST00000558088 PPP2R3AQ06190 1150 aa5.54□□□□□ -1.52
VPS13C-205ENST00000558088 ORC1Q13415 861 aa5.54□□□□□ -1.52
VPS13C-205ENST00000558088 SEZ6L2Q6UXD5 910 aa5.54□□□□□ -1.52
VPS13C-205ENST00000558088 NETO1Q8TDF5 533 aa5.54□□□□□ -1.52
VPS13C-205ENST00000558088 ABCB6Q9NP58 842 aa5.54□□□□□ -1.52
VPS13C-205ENST00000558088 ARID1BQ8NFD5 2236 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-205ENST00000558088 TMEM238LA0A1B0GVL6 79 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 TMPRSS2O15393 492 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 RNGTTO60942 597 aaKnown RBP5.53□□□□□ -1.52
VPS13C-205ENST00000558088 FAM87AP0C7U9 286 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 LIG1P18858 919 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 SERPINB4P48594 390 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 ZNF792Q3KQV3 632 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 SMYD4Q8IYR2 804 aaPredicted RBP5.53□□□□□ -1.52
VPS13C-205ENST00000558088 CCDC74AQ96AQ1 378 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 FAM129BQ96TA1 746 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 ZC3H12CQ9C0D7 883 aaKnown RBP5.53□□□□□ -1.52
VPS13C-205ENST00000558088 KRT82Q9NSB4 513 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 CRIM1Q9NZV1 1036 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 PPP1R9AQ9ULJ8 1098 aa5.53□□□□□ -1.52
VPS13C-205ENST00000558088 EIF1AYO14602 144 aaKnown RBP5.52□□□□□ -1.53
VPS13C-205ENST00000558088 C8AP07357 584 aa5.52□□□□□ -1.53
VPS13C-205ENST00000558088 CDK5R2Q13319 367 aa5.52□□□□□ -1.53
VPS13C-205ENST00000558088 DTHD1Q6ZMT9 781 aa5.52□□□□□ -1.53
VPS13C-205ENST00000558088 ZNF574Q6ZN55 896 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-205ENST00000558088 CCDC86Q9H6F5 360 aaKnown RBP5.52□□□□□ -1.53
VPS13C-205ENST00000558088 SSU72Q9NP77 194 aaKnown RBP5.52□□□□□ -1.53
VPS13C-205ENST00000558088 NLRP2Q9NX02 1062 aa5.52□□□□□ -1.53
VPS13C-205ENST00000558088 GPN3Q9UHW5 284 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-205ENST00000558088 GTF3C3Q9Y5Q9 886 aa5.52□□□□□ -1.53
VPS13C-205ENST00000558088 GSTP1P09211 210 aaKnown RBP5.51□□□□□ -1.53
VPS13C-205ENST00000558088 ZNF157P51786 506 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-205ENST00000558088 ARHGAP4P98171 946 aa5.51□□□□□ -1.53
VPS13C-205ENST00000558088 COL19A1Q14993 1142 aa5.51□□□□□ -1.53
VPS13C-205ENST00000558088 FAM181AQ8N9Y4 354 aa5.51□□□□□ -1.53
VPS13C-205ENST00000558088 KCNB2Q92953 911 aa5.51□□□□□ -1.53
VPS13C-205ENST00000558088 DMRTB1Q96MA1 342 aa5.51□□□□□ -1.53
VPS13C-205ENST00000558088 FANCD2OSQ96PS1 177 aa5.51□□□□□ -1.53
VPS13C-205ENST00000558088 NIF3L1Q9GZT8 377 aa5.51□□□□□ -1.53
VPS13C-205ENST00000558088 RC3H2Q9HBD1 1191 aaKnown RBP5.51□□□□□ -1.53
VPS13C-205ENST00000558088 PAPLNO95428 1278 aa5.5□□□□□ -1.53
VPS13C-205ENST00000558088 XRCC5P13010 732 aaKnown RBP5.5□□□□□ -1.53
VPS13C-205ENST00000558088 JAG1P78504 1218 aa5.5□□□□□ -1.53
VPS13C-205ENST00000558088 PKN1Q16512 942 aa5.5□□□□□ -1.53
VPS13C-205ENST00000558088 IFI16Q16666 785 aaKnown RBP5.5□□□□□ -1.53
VPS13C-205ENST00000558088 KIF4BQ2VIQ3 1234 aa5.5□□□□□ -1.53
VPS13C-205ENST00000558088 SPRED2Q7Z698 418 aa5.5□□□□□ -1.53
VPS13C-205ENST00000558088 ATG4DQ86TL0 474 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-205ENST00000558088 PLD6Q8N2A8 252 aaKnown RBP5.5□□□□□ -1.53
VPS13C-205ENST00000558088 TMEM39AQ9NV64 488 aa5.5□□□□□ -1.53
VPS13C-205ENST00000558088 VAV3Q9UKW4 847 aa5.5□□□□□ -1.53
VPS13C-205ENST00000558088 PCOLCE2Q9UKZ9 415 aa5.5□□□□□ -1.53
VPS13C-205ENST00000558088 TMEM265A0A087WTH1 108 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 HCLS1P14317 486 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-205ENST00000558088 FUT4P22083 530 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 FCGRTP55899 365 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 PRKCQQ04759 706 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 PDE4CQ08493 712 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 BNIP3Q12983 259 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 GRM2Q14416 872 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 TTLL4Q14679 1199 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 PI4K2BQ8TCG2 481 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 WDR89Q96FK6 387 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-205ENST00000558088 HRASLS5Q96KN8 279 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 CSRNP1Q96S65 589 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 MKNK2Q9HBH9 465 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 DISC1Q9NRI5 854 aa5.49□□□□□ -1.53
VPS13C-205ENST00000558088 GPR182O15218 404 aa5.48□□□□□ -1.53
VPS13C-205ENST00000558088 ZNF862O60290 1169 aa5.48□□□□□ -1.53
VPS13C-205ENST00000558088 FAAP100Q0VG06 881 aa5.48□□□□□ -1.53
VPS13C-205ENST00000558088 ANGEL2Q5VTE6 544 aaKnown RBP5.48□□□□□ -1.53
VPS13C-205ENST00000558088 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.48□□□□□ -1.53
VPS13C-205ENST00000558088 CCER1Q8TC90 406 aaPredicted RBP5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms