RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 MYH13Q9UKX3 1938 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 LAMB1P07942 1786 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 SPDYE5A6NIY4 337 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 BCAR3O75815 825 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 CDC42EP5Q6NZY7 148 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 BRI3BPQ8WY22 251 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 CLUAP1Q96AJ1 413 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 ERO1AQ96HE7 468 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 MS4A4AQ96JQ5 239 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 PTPN18Q99952 460 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 TRIM17Q9Y577 477 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 SNCAIPQ9Y6H5 919 aa18.13■□□□□ 0.49
SHMT2-235ENST00000557740 GNAI2P04899 355 aa18.12■□□□□ 0.49
SHMT2-235ENST00000557740 TCP10Q12799 353 aa18.12■□□□□ 0.49
SHMT2-235ENST00000557740 TFCP2Q12800 502 aa18.12■□□□□ 0.49
SHMT2-235ENST00000557740 RASGRF1Q13972 1273 aa18.12■□□□□ 0.49
SHMT2-235ENST00000557740 MVPQ14764 893 aaKnown RBP18.12■□□□□ 0.49
SHMT2-235ENST00000557740 TAF1CQ15572 869 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-235ENST00000557740 ERO1BQ86YB8 467 aa18.12■□□□□ 0.49
SHMT2-235ENST00000557740 DZIP1Q86YF9 867 aaKnown RBP18.12■□□□□ 0.49
SHMT2-235ENST00000557740 FAM151AQ8WW52 585 aa18.12■□□□□ 0.49
SHMT2-235ENST00000557740 ZNF341Q9BYN7 854 aa18.12■□□□□ 0.49
SHMT2-235ENST00000557740 A0A1B0GUL7 405 aa18.11■□□□□ 0.49
SHMT2-235ENST00000557740 WDHD1O75717 1129 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-235ENST00000557740 CETPP11597 493 aa18.11■□□□□ 0.49
SHMT2-235ENST00000557740 HNRNPUQ00839 825 aaKnown RBP eCLIP18.11■□□□□ 0.49
SHMT2-235ENST00000557740 ZKSCAN4Q969J2 545 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-235ENST00000557740 USP40Q9NVE5 1235 aa18.11■□□□□ 0.49
SHMT2-235ENST00000557740 TNNQ9UQP3 1299 aa18.11■□□□□ 0.49
SHMT2-235ENST00000557740 PDS5AQ29RF7 1337 aaKnown RBP18.11■□□□□ 0.49
SHMT2-235ENST00000557740 ZBTB22O15209 634 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 TIMM10P62072 90 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 NFIAQ12857 509 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 SNAPC2Q13487 334 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 ZKSCAN2Q63HK3 967 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 MIGA2Q7L4E1 593 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 OTOP1Q7RTM1 612 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 SLF2Q8IX21 1173 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 CD99L2Q8TCZ2 262 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 XAGE2Q96GT9 111 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 ZFYVE28Q9HCC9 887 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 ABCF2Q9UG63 623 aa18.1■□□□□ 0.49
SHMT2-235ENST00000557740 SP3Q02447 781 aa18.09■□□□□ 0.49
SHMT2-235ENST00000557740 PPIL2Q13356 520 aa18.09■□□□□ 0.49
SHMT2-235ENST00000557740 GORABQ5T7V8 394 aa18.09■□□□□ 0.49
SHMT2-235ENST00000557740 SPTY2D1Q68D10 685 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-235ENST00000557740 NEUROD6Q96NK8 337 aa18.09■□□□□ 0.49
SHMT2-235ENST00000557740 IRF6O14896 467 aa18.08■□□□□ 0.48
SHMT2-235ENST00000557740 G3BP1Q13283 466 aaKnown RBP eCLIP18.08■□□□□ 0.488e-8■■■□□ 16.6
SHMT2-235ENST00000557740 FAM43AQ8N2R8 423 aa18.08■□□□□ 0.48
SHMT2-235ENST00000557740 EFCC1Q9HA90 598 aa18.08■□□□□ 0.48
SHMT2-235ENST00000557740 FAM198AQ9UFP1 575 aa18.08■□□□□ 0.48
SHMT2-235ENST00000557740 GAKO14976 1311 aa18.07■□□□□ 0.48
SHMT2-235ENST00000557740 PNMA6EA0A0J9YXQ4 647 aa18.07■□□□□ 0.48
SHMT2-235ENST00000557740 INPP5BP32019 993 aa18.07■□□□□ 0.48
SHMT2-235ENST00000557740 PPATQ06203 517 aa18.07■□□□□ 0.48
SHMT2-235ENST00000557740 MIER1Q8N108 512 aa18.07■□□□□ 0.48
SHMT2-235ENST00000557740 TMEM57Q8N5G2 664 aa18.07■□□□□ 0.48
SHMT2-235ENST00000557740 RGS3P49796 1198 aa18.06■□□□□ 0.48
SHMT2-235ENST00000557740 ARHGEF6Q15052 776 aa18.06■□□□□ 0.48
SHMT2-235ENST00000557740 DIEXFQ68CQ4 756 aaKnown RBP18.06■□□□□ 0.48
SHMT2-235ENST00000557740 FTSJ3Q8IY81 847 aaKnown RBP18.06■□□□□ 0.48
SHMT2-235ENST00000557740 ZCCHC17Q9NP64 241 aaKnown RBP18.06■□□□□ 0.48
SHMT2-235ENST00000557740 PDE4DIPQ5VU43 2346 aa18.05■□□□□ 0.48
SHMT2-235ENST00000557740 BTBD19C9JJ37 291 aa18.05■□□□□ 0.48
SHMT2-235ENST00000557740 ENTPD3O75355 529 aa18.05■□□□□ 0.48
SHMT2-235ENST00000557740 BTDP43251 543 aa18.05■□□□□ 0.48
SHMT2-235ENST00000557740 ERICH6Q7L0X2 663 aa18.05■□□□□ 0.48
SHMT2-235ENST00000557740 ZSCAN29Q8IWY8 852 aaPredicted RBP18.05■□□□□ 0.48
SHMT2-235ENST00000557740 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.05■□□□□ 0.48
SHMT2-235ENST00000557740 IDI2Q9BXS1 227 aa18.05■□□□□ 0.48
SHMT2-235ENST00000557740 ZNF112Q9UJU3 913 aa18.05■□□□□ 0.48
SHMT2-235ENST00000557740 PTPN22Q9Y2R2 807 aa18.05■□□□□ 0.48
SHMT2-235ENST00000557740 MROH7-TTC4A0A0A0MT08 1334 aa18.04■□□□□ 0.48
SHMT2-235ENST00000557740 OS9Q13438 667 aaPredicted RBP18.04■□□□□ 0.48
SHMT2-235ENST00000557740 NOL9Q5SY16 702 aaKnown RBP18.04■□□□□ 0.48
SHMT2-235ENST00000557740 SPATA5Q8NB90 893 aa18.04■□□□□ 0.48
SHMT2-235ENST00000557740 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.04■□□□□ 0.48
SHMT2-235ENST00000557740 RFX7Q2KHR2 1363 aa18.04■□□□□ 0.48
SHMT2-235ENST00000557740 GSTO1P78417 241 aa18.03■□□□□ 0.48
SHMT2-235ENST00000557740 MECOMQ03112 1051 aa18.03■□□□□ 0.48
SHMT2-235ENST00000557740 PICALMQ13492 652 aa18.03■□□□□ 0.48
SHMT2-235ENST00000557740 PI16Q6UXB8 463 aa18.03■□□□□ 0.48
SHMT2-235ENST00000557740 ITPRIPQ8IWB1 547 aa18.03■□□□□ 0.48
SHMT2-235ENST00000557740 ZFPM1Q8IX07 1006 aa18.03■□□□□ 0.48
SHMT2-235ENST00000557740 FAM163AQ96GL9 167 aaPredicted RBP18.03■□□□□ 0.48
SHMT2-235ENST00000557740 HMG20BQ9P0W2 317 aa18.03■□□□□ 0.48
SHMT2-235ENST00000557740 TLR2O60603 784 aa18.02■□□□□ 0.48
SHMT2-235ENST00000557740 UQCRFS1P1P0C7P4 283 aa18.02■□□□□ 0.48
SHMT2-235ENST00000557740 ARID4AP29374 1257 aaPredicted RBP18.02■□□□□ 0.48
SHMT2-235ENST00000557740 KIF22Q14807 665 aa18.02■□□□□ 0.48
SHMT2-235ENST00000557740 KCNH4Q9UQ05 1017 aa18.02■□□□□ 0.48
SHMT2-235ENST00000557740 ATRNL1Q5VV63 1379 aa18.02■□□□□ 0.47
SHMT2-235ENST00000557740 LDHCP07864 332 aa18.01■□□□□ 0.47
SHMT2-235ENST00000557740 POLA2Q14181 598 aa18.01■□□□□ 0.47
SHMT2-235ENST00000557740 ANKRD23Q86SG2 305 aa18.01■□□□□ 0.47
SHMT2-235ENST00000557740 DDX4Q9NQI0 724 aaKnown RBP18.01■□□□□ 0.47
SHMT2-235ENST00000557740 PICK1Q9NRD5 415 aa18.01■□□□□ 0.47
SHMT2-235ENST00000557740 RAI14Q9P0K7 980 aa18.01■□□□□ 0.47
SHMT2-235ENST00000557740 AK9Q5TCS8 1911 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms