RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 C1GALT1Q9NS00 363 aa7.55□□□□□ -1.2
SCFD1-219ENST00000556413 PPP1R9AQ9ULJ8 1098 aa7.55□□□□□ -1.2
SCFD1-219ENST00000556413 TMEM238LA0A1B0GVL6 79 aa7.54□□□□□ -1.2
SCFD1-219ENST00000556413 DYNC1LI2O43237 492 aaPredicted RBP7.54□□□□□ -1.2
SCFD1-219ENST00000556413 CYP27A1Q02318 531 aa7.54□□□□□ -1.2
SCFD1-219ENST00000556413 AP3B2Q13367 1082 aa7.54□□□□□ -1.2
SCFD1-219ENST00000556413 TP53INP2Q8IXH6 220 aa7.54□□□□□ -1.2
SCFD1-219ENST00000556413 LRRC4CQ9HCJ2 640 aa7.54□□□□□ -1.2
SCFD1-219ENST00000556413 ZC3H7BQ9UGR2 993 aaKnown RBP7.54□□□□□ -1.2
SCFD1-219ENST00000556413 SYNGAP1Q96PV0 1343 aa7.53□□□□□ -1.2
SCFD1-219ENST00000556413 BTBD11A6QL63 1104 aa7.53□□□□□ -1.2
SCFD1-219ENST00000556413 GADD45BO75293 160 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-219ENST00000556413 ZNF157P51786 506 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-219ENST00000556413 FAAP100Q0VG06 881 aa7.53□□□□□ -1.2
SCFD1-219ENST00000556413 COL19A1Q14993 1142 aa7.53□□□□□ -1.2
SCFD1-219ENST00000556413 RPS26P11Q5JNZ5 115 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-219ENST00000556413 CBLL1Q75N03 491 aa7.53□□□□□ -1.2
SCFD1-219ENST00000556413 GLIS3Q8NEA6 775 aa7.53□□□□□ -1.2
SCFD1-219ENST00000556413 TMC1Q8TDI8 760 aa7.53□□□□□ -1.2
SCFD1-219ENST00000556413 WDR89Q96FK6 387 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-219ENST00000556413 LGR6Q9HBX8 967 aa7.53□□□□□ -1.2
SCFD1-219ENST00000556413 DAGLAQ9Y4D2 1042 aa7.53□□□□□ -1.2
SCFD1-219ENST00000556413 LIG1P18858 919 aa7.52□□□□□ -1.21
SCFD1-219ENST00000556413 GRM2Q14416 872 aa7.52□□□□□ -1.21
SCFD1-219ENST00000556413 TMPRSS2O15393 492 aa7.51□□□□□ -1.21
SCFD1-219ENST00000556413 OGFOD3Q6PK18 319 aa7.51□□□□□ -1.21
SCFD1-219ENST00000556413 FLCNQ8NFG4 579 aa7.51□□□□□ -1.21
SCFD1-219ENST00000556413 EPS8L3Q8TE67 593 aaKnown RBP7.51□□□□□ -1.21
SCFD1-219ENST00000556413 CSRNP1Q96S65 589 aa7.51□□□□□ -1.21
SCFD1-219ENST00000556413 ZC3H12CQ9C0D7 883 aaKnown RBP7.51□□□□□ -1.21
SCFD1-219ENST00000556413 CCDC86Q9H6F5 360 aaKnown RBP7.51□□□□□ -1.21
SCFD1-219ENST00000556413 PAK6Q9NQU5 681 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-219ENST00000556413 TRAK1Q9UPV9 953 aa7.51□□□□□ -1.21
SCFD1-219ENST00000556413 YBX3P16989 372 aaKnown RBP eCLIP7.5□□□□□ -1.21
SCFD1-219ENST00000556413 ALKBH8Q96BT7 664 aaKnown RBP7.5□□□□□ -1.21
SCFD1-219ENST00000556413 DMRTB1Q96MA1 342 aa7.5□□□□□ -1.21
SCFD1-219ENST00000556413 RBCK1Q9BYM8 510 aa7.5□□□□□ -1.21
SCFD1-219ENST00000556413 CRIM1Q9NZV1 1036 aa7.5□□□□□ -1.21
SCFD1-219ENST00000556413 ZNF862O60290 1169 aa7.49□□□□□ -1.21
SCFD1-219ENST00000556413 AGBL5Q8NDL9 886 aa7.49□□□□□ -1.21
SCFD1-219ENST00000556413 FANCD2OSQ96PS1 177 aa7.49□□□□□ -1.21
SCFD1-219ENST00000556413 GSTP1P09211 210 aaKnown RBP7.48□□□□□ -1.21
SCFD1-219ENST00000556413 SLFN14P0C7P3 912 aa7.48□□□□□ -1.21
SCFD1-219ENST00000556413 ID3Q02535 119 aa7.48□□□□□ -1.21
SCFD1-219ENST00000556413 KIF4BQ2VIQ3 1234 aa7.48□□□□□ -1.21
SCFD1-219ENST00000556413 RETREG2Q8NC44 543 aa7.48□□□□□ -1.21
SCFD1-219ENST00000556413 BCL7CQ8WUZ0 217 aaPredicted RBP7.48□□□□□ -1.21
SCFD1-219ENST00000556413 ITGB5P18084 799 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 PI16Q6UXB8 463 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 DTHD1Q6ZMT9 781 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 WFDC3Q8IUB2 231 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 CCER1Q8TC90 406 aaPredicted RBP7.47□□□□□ -1.21
SCFD1-219ENST00000556413 ARID3AQ99856 593 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 ATXN3LQ9H3M9 355 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 PIDD1Q9HB75 910 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 DISC1Q9NRI5 854 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 KRT82Q9NSB4 513 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 PCDHGC5Q9Y5F6 944 aa7.47□□□□□ -1.21
SCFD1-219ENST00000556413 FCGRTP55899 365 aa7.46□□□□□ -1.22
SCFD1-219ENST00000556413 CDK5R2Q13319 367 aa7.46□□□□□ -1.22
SCFD1-219ENST00000556413 CYP27C1Q4G0S4 372 aa7.46□□□□□ -1.22
SCFD1-219ENST00000556413 PDZD3Q86UT5 571 aa7.46□□□□□ -1.22
SCFD1-219ENST00000556413 SMYD4Q8IYR2 804 aaPredicted RBP7.46□□□□□ -1.22
SCFD1-219ENST00000556413 SLC5A6Q9Y289 635 aa7.46□□□□□ -1.22
SCFD1-219ENST00000556413 FAM87AP0C7U9 286 aa7.45□□□□□ -1.22
SCFD1-219ENST00000556413 ZNF574Q6ZN55 896 aaPredicted RBP7.45□□□□□ -1.22
SCFD1-219ENST00000556413 TMC7Q7Z402 723 aa7.45□□□□□ -1.22
SCFD1-219ENST00000556413 SPRED2Q7Z698 418 aa7.45□□□□□ -1.22
SCFD1-219ENST00000556413 ASIC4Q96FT7 647 aa7.45□□□□□ -1.22
SCFD1-219ENST00000556413 TMEM39AQ9NV64 488 aa7.45□□□□□ -1.22
SCFD1-219ENST00000556413 NLRP2Q9NX02 1062 aa7.45□□□□□ -1.22
SCFD1-219ENST00000556413 GPN3Q9UHW5 284 aaPredicted RBP7.45□□□□□ -1.22
SCFD1-219ENST00000556413 SOWAHDA6NJG2 315 aa7.44□□□□□ -1.22
SCFD1-219ENST00000556413 PPP2R3AQ06190 1150 aa7.44□□□□□ -1.22
SCFD1-219ENST00000556413 TTLL4Q14679 1199 aa7.44□□□□□ -1.22
SCFD1-219ENST00000556413 OGFOD2Q6N063 350 aa7.44□□□□□ -1.22
SCFD1-219ENST00000556413 STK35Q8TDR2 534 aa7.44□□□□□ -1.22
SCFD1-219ENST00000556413 BCO2Q9BYV7 579 aa7.44□□□□□ -1.22
SCFD1-219ENST00000556413 PPP4R2Q9NY27 417 aa7.44□□□□□ -1.22
SCFD1-219ENST00000556413 RNGTTO60942 597 aaKnown RBP7.43□□□□□ -1.22
SCFD1-219ENST00000556413 HCLS1P14317 486 aaPredicted RBP7.43□□□□□ -1.22
SCFD1-219ENST00000556413 JUNBP17275 347 aaPredicted RBP7.43□□□□□ -1.22
SCFD1-219ENST00000556413 BNIP3Q12983 259 aa7.43□□□□□ -1.22
SCFD1-219ENST00000556413 STK11IPQ8N1F8 1099 aa7.43□□□□□ -1.22
SCFD1-219ENST00000556413 PLD6Q8N2A8 252 aaKnown RBP7.43□□□□□ -1.22
SCFD1-219ENST00000556413 FAM181AQ8N9Y4 354 aa7.43□□□□□ -1.22
SCFD1-219ENST00000556413 KCNB2Q92953 911 aa7.43□□□□□ -1.22
SCFD1-219ENST00000556413 KRTAP4-8A0A0G2JLE6 195 aa7.42□□□□□ -1.22
SCFD1-219ENST00000556413 LEFTY1O75610 366 aa7.42□□□□□ -1.22
SCFD1-219ENST00000556413 XRCC5P13010 732 aaKnown RBP7.42□□□□□ -1.22
SCFD1-219ENST00000556413 HNRNPUQ00839 825 aaKnown RBP eCLIP7.42□□□□□ -1.22
SCFD1-219ENST00000556413 PDE4CQ08493 712 aa7.42□□□□□ -1.22
SCFD1-219ENST00000556413 PLCL1Q15111 1095 aa7.42□□□□□ -1.22
SCFD1-219ENST00000556413 SULF2Q8IWU5 870 aa7.42□□□□□ -1.22
SCFD1-219ENST00000556413 NETO1Q8TDF5 533 aa7.42□□□□□ -1.22
SCFD1-219ENST00000556413 U3KQE9 123 aa7.42□□□□□ -1.22
SCFD1-219ENST00000556413 NEFMP07197 916 aa7.41□□□□□ -1.22
SCFD1-219ENST00000556413 DSC3Q14574 896 aa7.41□□□□□ -1.22
SCFD1-219ENST00000556413 ZNF792Q3KQV3 632 aa7.41□□□□□ -1.22
SCFD1-219ENST00000556413 NXPE4Q6UWF7 544 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 185.3 ms