RNA–Protein interactions for RNA: ENST00000556011.5

PSEN1-215, Transcript of presenilin 1, human

TSL 5

Gene PSEN1, Length 442 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-215	ENST00000556011	FBN2	P35556	2912 aa		10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	DDX60	Q8IY21	1712 aa	Known RBP	10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	TRIM43B	A6NCK2	446 aa		10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	RIMBP2	O15034	1052 aa		10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	HSP90AB1	P08238	724 aa	Known RBP	10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	POU3F3	P20264	500 aa	Predicted RBP	10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	RING1	Q06587	406 aa		10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	SOWAHC	Q53LP3	525 aa	Predicted RBP	10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	FAM117B	Q6P1L5	589 aa		10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	TRIM43	Q96BQ3	446 aa	Predicted RBP	10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	ZCCHC17	Q9NP64	241 aa	Known RBP	10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	MSRA	Q9UJ68	235 aa		10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	RELN	P78509	3460 aa		10.81	□□□□□ -0.68
PSEN1-215	ENST00000556011	OTOGL	Q3ZCN5	2332 aa		10.8	□□□□□ -0.68
PSEN1-215	ENST00000556011	LAMA5	O15230	3695 aa		10.8	□□□□□ -0.68
PSEN1-215	ENST00000556011	USP17L8	P0C7I0	530 aa		10.8	□□□□□ -0.68
PSEN1-215	ENST00000556011	TRIM67	Q6ZTA4	783 aa		10.8	□□□□□ -0.68
PSEN1-215	ENST00000556011	ANKRD13A	Q8IZ07	590 aa		10.8	□□□□□ -0.68
PSEN1-215	ENST00000556011	AK9	Q5TCS8	1911 aa		10.8	□□□□□ -0.68
PSEN1-215	ENST00000556011	USP2	O75604	605 aa	Predicted RBP	10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	ATXN1	P54253	815 aa	Known RBP	10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	HERC4	Q5GLZ8	1057 aa	Predicted RBP	10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	MCTP2	Q6DN12	878 aa		10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	ZNF496	Q96IT1	587 aa	Predicted RBP	10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	PDLIM7	Q9NR12	457 aa		10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	ZMIZ1	Q9ULJ6	1067 aa		10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	NIP7	Q9Y221	180 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	YBX2	Q9Y2T7	364 aa	Known RBP	10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	EVC2	Q86UK5	1308 aa		10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	DMXL2	Q8TDJ6	3036 aa		10.79	□□□□□ -0.68
PSEN1-215	ENST00000556011	GALR2	O43603	387 aa	Predicted RBP	10.78	□□□□□ -0.68
PSEN1-215	ENST00000556011	HMGCR	P04035	888 aa		10.78	□□□□□ -0.68
PSEN1-215	ENST00000556011	IREB2	P48200	963 aa	Known RBP	10.78	□□□□□ -0.68
PSEN1-215	ENST00000556011	SLC39A6	Q13433	755 aa		10.78	□□□□□ -0.68
PSEN1-215	ENST00000556011	WASHC4	Q2M389	1173 aa		10.78	□□□□□ -0.68
PSEN1-215	ENST00000556011	WNT10B	O00744	389 aa		10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	ZP2	Q05996	745 aa		10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	RAB30	Q15771	203 aa		10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	LEXM	Q3ZCV2	418 aa		10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	RSBN1L	Q6PCB5	846 aa	Predicted RBP	10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	DZIP3	Q86Y13	1208 aa	Known RBP	10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	MTMR14	Q8NCE2	650 aa		10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	AGBL3	Q8NEM8	1001 aa		10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	ADAM32	Q8TC27	787 aa		10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	COG3	Q96JB2	828 aa		10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	ANKFY1	Q9P2R3	1169 aa		10.77	□□□□□ -0.69
PSEN1-215	ENST00000556011	EDC4	Q6P2E9	1401 aa	Known RBP	10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	RLF	Q13129	1914 aa		10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	FREM2	Q5SZK8	3169 aa		10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	ST20-MTHFS	A0A0A6YYL1	179 aa		10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	GRXCR2	A6NFK2	248 aa		10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	C19orf67	A6NJJ6	358 aa		10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	PROS1	P07225	676 aa		10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	IL6ST	P40189	918 aa	Predicted RBP	10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	MTHFS	P49914	203 aa		10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	DCAF11	Q8TEB1	546 aa		10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	UPF3B	Q9BZI7	483 aa	Known RBP	10.76	□□□□□ -0.69
PSEN1-215	ENST00000556011	FRMPD3	Q5JV73	1810 aa		10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	DCDC2B	A2VCK2	349 aa		10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	SASH1	O94885	1247 aa		10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	STARD3NL	O95772	234 aa		10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	CETP	P11597	493 aa		10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	CLEC4G	Q6UXB4	293 aa		10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	C3orf67	Q6ZVT6	689 aa		10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	GML	Q99445	158 aa		10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.75	□□□□□ -0.69	5e-12	■□□□□ 10.8
PSEN1-215	ENST00000556011	DEFB129	Q9H1M3	183 aa		10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	UBE2Z	Q9H832	354 aa	Predicted RBP	10.75	□□□□□ -0.69
PSEN1-215	ENST00000556011	TNPO2	O14787	897 aa	Known RBP	10.74	□□□□□ -0.69
PSEN1-215	ENST00000556011	BCR	P11274	1271 aa		10.74	□□□□□ -0.69
PSEN1-215	ENST00000556011	KCNA5	P22460	613 aa		10.74	□□□□□ -0.69
PSEN1-215	ENST00000556011	FPGS	Q05932	587 aa		10.74	□□□□□ -0.69
PSEN1-215	ENST00000556011	NBPF20	Q3BBV1	942 aa		10.74	□□□□□ -0.69
PSEN1-215	ENST00000556011	RUNDC1	Q96C34	613 aa		10.74	□□□□□ -0.69
PSEN1-215	ENST00000556011	KCNH4	Q9UQ05	1017 aa		10.74	□□□□□ -0.69
PSEN1-215	ENST00000556011	PSME4	Q14997	1843 aa		10.73	□□□□□ -0.69
PSEN1-215	ENST00000556011	LHX8	Q68G74	356 aa		10.73	□□□□□ -0.69
PSEN1-215	ENST00000556011	NPM2	Q86SE8	214 aa	Known RBP	10.73	□□□□□ -0.69
PSEN1-215	ENST00000556011	KCNG4	Q8TDN1	519 aa		10.73	□□□□□ -0.69
PSEN1-215	ENST00000556011	COL12A1	Q99715	3063 aa		10.72	□□□□□ -0.69
PSEN1-215	ENST00000556011	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	10.72	□□□□□ -0.69
PSEN1-215	ENST00000556011	EPHA10	Q5JZY3	1008 aa		10.72	□□□□□ -0.69
PSEN1-215	ENST00000556011	PPP2R2D	Q66LE6	453 aa		10.72	□□□□□ -0.69
PSEN1-215	ENST00000556011	VSIG10	Q8N0Z9	540 aa		10.72	□□□□□ -0.69
PSEN1-215	ENST00000556011	ABCC4	O15439	1325 aa		10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	TRIM60	Q495X7	471 aa		10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	RNF135	Q8IUD6	432 aa		10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	CRIPAK	Q8N1N5	446 aa		10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	EYA1	Q99502	592 aa		10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	LSM14B	Q9BX40	385 aa	Known RBP	10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	KCNK4	Q9NYG8	393 aa		10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	ANGPTL2	Q9UKU9	493 aa		10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	ZNF652	Q9Y2D9	606 aa		10.71	□□□□□ -0.69
PSEN1-215	ENST00000556011	EPOP	A6NHQ4	379 aa		10.7	□□□□□ -0.7
PSEN1-215	ENST00000556011	PDHX	O00330	501 aa		10.7	□□□□□ -0.7
PSEN1-215	ENST00000556011	NUBP1	P53384	320 aa		10.7	□□□□□ -0.7

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