RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 DIXDC1Q155Q3 683 aa13.38□□□□□ -0.27
SHMT2-220ENST00000555634 DSCC1Q9BVC3 393 aa13.38□□□□□ -0.27
SHMT2-220ENST00000555634 SLC4A4Q9Y6R1 1079 aa13.38□□□□□ -0.27
SHMT2-220ENST00000555634 ZNF541Q9H0D2 1346 aa13.38□□□□□ -0.27
SHMT2-220ENST00000555634 H7C1D1 291 aa13.37□□□□□ -0.27
SHMT2-220ENST00000555634 CERS5Q8N5B7 392 aa13.37□□□□□ -0.27
SHMT2-220ENST00000555634 DPF2Q92785 391 aa13.37□□□□□ -0.27
SHMT2-220ENST00000555634 OSBP2Q969R2 916 aa13.37□□□□□ -0.27
SHMT2-220ENST00000555634 FAM163AQ96GL9 167 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-220ENST00000555634 ZDHHC15Q96MV8 337 aa13.37□□□□□ -0.27
SHMT2-220ENST00000555634 MRIQ9BWK5 157 aa13.37□□□□□ -0.27
SHMT2-220ENST00000555634 PUS7LQ9H0K6 701 aaKnown RBP13.37□□□□□ -0.27
SHMT2-220ENST00000555634 NAPBQ9H115 298 aa13.37□□□□□ -0.27
SHMT2-220ENST00000555634 DAGLAQ9Y4D2 1042 aa13.37□□□□□ -0.27
SHMT2-220ENST00000555634 ZMYM6O95789 1325 aa13.37□□□□□ -0.27
SHMT2-220ENST00000555634 WDR90Q96KV7 1748 aa13.36□□□□□ -0.27
SHMT2-220ENST00000555634 SLC3A2P08195 630 aaKnown RBP13.36□□□□□ -0.27
SHMT2-220ENST00000555634 GMPSP49915 693 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-220ENST00000555634 IMMTQ16891 758 aaKnown RBP13.36□□□□□ -0.27
SHMT2-220ENST00000555634 CCDC129Q6ZRS4 1044 aa13.36□□□□□ -0.27
SHMT2-220ENST00000555634 ZNF589Q86UQ0 364 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-220ENST00000555634 TEX11Q8IYF3 940 aa13.36□□□□□ -0.27
SHMT2-220ENST00000555634 LCORLQ8N3X6 602 aa13.36□□□□□ -0.27
SHMT2-220ENST00000555634 SEC62Q99442 399 aaKnown RBP13.36□□□□□ -0.27
SHMT2-220ENST00000555634 MXD3Q9BW11 206 aa13.36□□□□□ -0.27
SHMT2-220ENST00000555634 ARMT1Q9H993 441 aa13.36□□□□□ -0.27
SHMT2-220ENST00000555634 KCNQ5Q9NR82 932 aa13.36□□□□□ -0.27
SHMT2-220ENST00000555634 ATP8A2Q9NTI2 1148 aa13.36□□□□□ -0.27
SHMT2-220ENST00000555634 ARPP21Q9UBL0 812 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-220ENST00000555634 GPR75-ASB3A0A0A6YYF3 556 aa13.35□□□□□ -0.27
SHMT2-220ENST00000555634 IQCA1LA6NCM1 817 aa13.35□□□□□ -0.27
SHMT2-220ENST00000555634 TNFAIP1Q13829 316 aa13.35□□□□□ -0.27
SHMT2-220ENST00000555634 CFAP100Q494V2 611 aa13.35□□□□□ -0.27
SHMT2-220ENST00000555634 GIMAP6Q6P9H5 292 aa13.35□□□□□ -0.27
SHMT2-220ENST00000555634 MICALL2Q8IY33 904 aa13.35□□□□□ -0.27
SHMT2-220ENST00000555634 C22orf23Q9BZE7 217 aa13.35□□□□□ -0.27
SHMT2-220ENST00000555634 PATL2C9JE40 543 aaKnown RBP13.34□□□□□ -0.27
SHMT2-220ENST00000555634 HSPD1P10809 573 aaKnown RBP13.34□□□□□ -0.27
SHMT2-220ENST00000555634 TNNI2P48788 182 aa13.34□□□□□ -0.27
SHMT2-220ENST00000555634 PPP4CP60510 307 aa13.34□□□□□ -0.27
SHMT2-220ENST00000555634 KRT32Q14532 448 aa13.34□□□□□ -0.27
SHMT2-220ENST00000555634 ADGRA1Q86SQ6 560 aa13.34□□□□□ -0.27
SHMT2-220ENST00000555634 STRBPQ96SI9 672 aaKnown RBP13.34□□□□□ -0.27
SHMT2-220ENST00000555634 TRIM34Q9BYJ4 488 aa13.34□□□□□ -0.27
SHMT2-220ENST00000555634 MYOZ2Q9NPC6 264 aa13.34□□□□□ -0.27
SHMT2-220ENST00000555634 ZBTB12Q9Y330 459 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-220ENST00000555634 RBM8AQ9Y5S9 174 aaKnown RBP13.34□□□□□ -0.27
SHMT2-220ENST00000555634 GOLGB1Q14789 3259 aaKnown RBP13.33□□□□□ -0.28
SHMT2-220ENST00000555634 SPDYE2BA6NHP3 402 aa13.33□□□□□ -0.28
SHMT2-220ENST00000555634 SPDYE6P0CI01 402 aa13.33□□□□□ -0.28
SHMT2-220ENST00000555634 PRELPP51888 382 aa13.33□□□□□ -0.28
SHMT2-220ENST00000555634 GRIK5Q16478 980 aa13.33□□□□□ -0.28
SHMT2-220ENST00000555634 KIF4BQ2VIQ3 1234 aa13.33□□□□□ -0.28
SHMT2-220ENST00000555634 SH3RF3Q8TEJ3 882 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-220ENST00000555634 GMLQ99445 158 aa13.33□□□□□ -0.28
SHMT2-220ENST00000555634 RIOK1Q9BRS2 568 aaKnown RBP13.33□□□□□ -0.28
SHMT2-220ENST00000555634 LSG1Q9H089 658 aaKnown RBP13.33□□□□□ -0.28
SHMT2-220ENST00000555634 ZNF287Q9HBT7 754 aa13.33□□□□□ -0.28
SHMT2-220ENST00000555634 USP40Q9NVE5 1235 aa13.33□□□□□ -0.28
SHMT2-220ENST00000555634 CNOT7Q9UIV1 285 aaKnown RBP13.33□□□□□ -0.28
SHMT2-220ENST00000555634 COL2A1P02458 1487 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-220ENST00000555634 ZNF213O14771 459 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 CHGBP05060 677 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 HLA-DOAP06340 250 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 ZNF280AP59817 542 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-220ENST00000555634 ANAPC15P60006 121 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 DYNLL1P63167 89 aaKnown RBP13.32□□□□□ -0.28
SHMT2-220ENST00000555634 TRDNQ13061 729 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 SLFNL1Q499Z3 407 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 MTMR14Q8NCE2 650 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 IL27Q8NEV9 243 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 ZNF384Q8TF68 577 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 MAP4K1Q92918 833 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 RNF41Q9H4P4 317 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-220ENST00000555634 GPRC5DQ9NZD1 345 aa13.32□□□□□ -0.28
SHMT2-220ENST00000555634 POLR3DP05423 398 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-220ENST00000555634 PICALMQ13492 652 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 ALX1Q15699 326 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 RALYLQ86SE5 291 aaKnown RBP13.31□□□□□ -0.28
SHMT2-220ENST00000555634 APOBEC3FQ8IUX4 373 aaKnown RBP13.31□□□□□ -0.28
SHMT2-220ENST00000555634 IFNL3Q8IZI9 196 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 TGFBRAP1Q8WUH2 860 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 SDR42E1Q8WUS8 393 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 TBC1D32Q96NH3 1257 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 USP26Q9BXU7 913 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 VEZTQ9HBM0 779 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 ADARB2Q9NS39 739 aaKnown RBP13.31□□□□□ -0.28
SHMT2-220ENST00000555634 MCM9Q9NXL9 1143 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 HACL1Q9UJ83 578 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 FLT1P17948 1338 aa13.31□□□□□ -0.28
SHMT2-220ENST00000555634 ATAD5Q96QE3 1844 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 GLTPD2A6NH11 291 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 PCP11498 1178 aaKnown RBP13.3□□□□□ -0.28
SHMT2-220ENST00000555634 PSMA5P28066 241 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 HSPA4P34932 840 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 ANP32AP39687 249 aaKnown RBP13.3□□□□□ -0.28
SHMT2-220ENST00000555634 RBM25P49756 843 aaKnown RBP13.3□□□□□ -0.28
SHMT2-220ENST00000555634 NT5C2P49902 561 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 PTH1RQ03431 593 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 CDC42EP5Q6NZY7 148 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms