RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 EPHX2P34913 555 aa12.27□□□□□ -0.45
SYNE2-215ENST00000554997 BTDP43251 543 aa12.27□□□□□ -0.45
SYNE2-215ENST00000554997 HIRAP54198 1017 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-215ENST00000554997 TBC1D10BQ4KMP7 808 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-215ENST00000554997 CASC1Q6TDU7 716 aa12.27□□□□□ -0.45
SYNE2-215ENST00000554997 PNMA8AQ86V59 439 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-215ENST00000554997 MIGA1Q8NAN2 632 aa12.27□□□□□ -0.45
SYNE2-215ENST00000554997 FAM227BQ96M60 508 aa12.27□□□□□ -0.45
SYNE2-215ENST00000554997 STRBPQ96SI9 672 aaKnown RBP12.27□□□□□ -0.45
SYNE2-215ENST00000554997 RIOK1Q9BRS2 568 aaKnown RBP12.27□□□□□ -0.45
SYNE2-215ENST00000554997 TAF1DQ9H5J8 278 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-215ENST00000554997 AATFQ9NY61 560 aaKnown RBP eCLIP12.27□□□□□ -0.45
SYNE2-215ENST00000554997 PCDHAC2Q9Y5I4 1007 aa12.27□□□□□ -0.45
SYNE2-215ENST00000554997 EGFRP00533 1210 aa12.26□□□□□ -0.45
SYNE2-215ENST00000554997 MFAP1P55081 439 aaKnown RBP12.26□□□□□ -0.45
SYNE2-215ENST00000554997 RHBDL3P58872 404 aa12.26□□□□□ -0.45
SYNE2-215ENST00000554997 DYNLL1P63167 89 aaKnown RBP12.26□□□□□ -0.45
SYNE2-215ENST00000554997 KIF4BQ2VIQ3 1234 aa12.26□□□□□ -0.45
SYNE2-215ENST00000554997 NBPF9Q3BBW0 867 aa12.26□□□□□ -0.45
SYNE2-215ENST00000554997 CDC42EP5Q6NZY7 148 aa12.26□□□□□ -0.45
SYNE2-215ENST00000554997 ZC3H15Q8WU90 426 aaKnown RBP12.26□□□□□ -0.45
SYNE2-215ENST00000554997 AIDAQ96BJ3 306 aa12.26□□□□□ -0.45
SYNE2-215ENST00000554997 SEC62Q99442 399 aaKnown RBP12.26□□□□□ -0.45
SYNE2-215ENST00000554997 TDRD3Q9H7E2 651 aaKnown RBP12.26□□□□□ -0.45
SYNE2-215ENST00000554997 PGAP2Q9UHJ9 254 aa12.26□□□□□ -0.45
SYNE2-215ENST00000554997 A0A0D9SFI3 127 aa12.25□□□□□ -0.45
SYNE2-215ENST00000554997 PATL2C9JE40 543 aaKnown RBP12.25□□□□□ -0.45
SYNE2-215ENST00000554997 M0R2C6 588 aa12.25□□□□□ -0.45
SYNE2-215ENST00000554997 SGSM2O43147 1006 aa12.25□□□□□ -0.45
SYNE2-215ENST00000554997 GNAT2P19087 354 aa12.25□□□□□ -0.45
SYNE2-215ENST00000554997 FKBP1CQ5VVH2 108 aa12.25□□□□□ -0.45
SYNE2-215ENST00000554997 SH3RF3Q8TEJ3 882 aaPredicted RBP12.25□□□□□ -0.45
SYNE2-215ENST00000554997 IDI2Q9BXS1 227 aa12.25□□□□□ -0.45
SYNE2-215ENST00000554997 ARMT1Q9H993 441 aa12.25□□□□□ -0.45
SYNE2-215ENST00000554997 ZNF70Q9UC06 446 aaPredicted RBP12.25□□□□□ -0.45
SYNE2-215ENST00000554997 TIAM2Q8IVF5 1701 aa12.25□□□□□ -0.45
SYNE2-215ENST00000554997 PSME4Q14997 1843 aa12.25□□□□□ -0.45
SYNE2-215ENST00000554997 ZNF646O15015 1829 aaPredicted RBP12.24□□□□□ -0.45
SYNE2-215ENST00000554997 GPAA1O43292 621 aa12.24□□□□□ -0.45
SYNE2-215ENST00000554997 NPM3O75607 178 aaKnown RBP12.24□□□□□ -0.45
SYNE2-215ENST00000554997 MBD4O95243 580 aa12.24□□□□□ -0.45
SYNE2-215ENST00000554997 SPDYE2Q495Y8 402 aa12.24□□□□□ -0.45
SYNE2-215ENST00000554997 LCORLQ8N3X6 602 aa12.24□□□□□ -0.45
SYNE2-215ENST00000554997 TRPM4Q8TD43 1214 aa12.24□□□□□ -0.45
SYNE2-215ENST00000554997 ESYT1Q9BSJ8 1104 aa12.24□□□□□ -0.45
SYNE2-215ENST00000554997 CRNKL1Q9BZJ0 848 aaKnown RBP12.24□□□□□ -0.45
SYNE2-215ENST00000554997 RAD50Q92878 1312 aa12.23□□□□□ -0.45
SYNE2-215ENST00000554997 WDHD1O75717 1129 aaPredicted RBP12.23□□□□□ -0.45
SYNE2-215ENST00000554997 GIMAP6Q6P9H5 292 aa12.23□□□□□ -0.45
SYNE2-215ENST00000554997 TEX11Q8IYF3 940 aa12.23□□□□□ -0.45
SYNE2-215ENST00000554997 ZNF784Q8NCA9 323 aaPredicted RBP12.23□□□□□ -0.45
SYNE2-215ENST00000554997 NMRK2Q9NPI5 230 aa12.23□□□□□ -0.45
SYNE2-215ENST00000554997 ATP8A2Q9NTI2 1148 aa12.23□□□□□ -0.45
SYNE2-215ENST00000554997 SLC4A4Q9Y6R1 1079 aa12.23□□□□□ -0.45
SYNE2-215ENST00000554997 RPAP1Q9BWH6 1393 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-215ENST00000554997 CCDC171Q6TFL3 1326 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 CLRN2A0PK11 232 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 GSG1L2A8MUP6 293 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 PRKAB2O43741 272 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 EIF5BO60841 1220 aaKnown RBP12.22□□□□□ -0.45
SYNE2-215ENST00000554997 ENTPD3O75355 529 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 HSPD1P10809 573 aaKnown RBP12.22□□□□□ -0.45
SYNE2-215ENST00000554997 ANGEL2Q5VTE6 544 aaKnown RBP12.22□□□□□ -0.45
SYNE2-215ENST00000554997 CCDC129Q6ZRS4 1044 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 KIAA1211Q6ZU35 1233 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 ZNF589Q86UQ0 364 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-215ENST00000554997 FAM83AQ86UY5 434 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 ZNF526Q8TF50 670 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-215ENST00000554997 TGFBRAP1Q8WUH2 860 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 IL25Q9H293 177 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 GPBP1L1Q9HC44 474 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-215ENST00000554997 TMOD2Q9NZR1 351 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 MKRN1Q9UHC7 482 aaKnown RBP12.22□□□□□ -0.45
SYNE2-215ENST00000554997 WDR90Q96KV7 1748 aa12.22□□□□□ -0.45
SYNE2-215ENST00000554997 MYH13Q9UKX3 1938 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 DOCK2Q92608 1830 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 PITPNM2Q9BZ72 1349 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 APPP05067 770 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 USP5P45974 858 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 TNNI2P48788 182 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 CACNB3P54284 484 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 NFIAQ12857 509 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 ALX1Q15699 326 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 EAPPQ56P03 285 aaPredicted RBP12.21□□□□□ -0.45
SYNE2-215ENST00000554997 IFNL3Q8IZI9 196 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 FAM151AQ8WW52 585 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 DCPSQ96C86 337 aaKnown RBP12.21□□□□□ -0.45
SYNE2-215ENST00000554997 DSCC1Q9BVC3 393 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 NACAP1Q9BZK3 213 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 FAM198AQ9UFP1 575 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 CLEC11AQ9Y240 323 aa12.21□□□□□ -0.45
SYNE2-215ENST00000554997 ASTN2O75129 1339 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-215ENST00000554997 TCP10L2B9ZVM9 353 aa12.2□□□□□ -0.46
SYNE2-215ENST00000554997 TNFAIP1Q13829 316 aa12.2□□□□□ -0.46
SYNE2-215ENST00000554997 C8orf34Q49A92 452 aa12.2□□□□□ -0.46
SYNE2-215ENST00000554997 VPS53Q5VIR6 699 aa12.2□□□□□ -0.46
SYNE2-215ENST00000554997 APOBEC3FQ8IUX4 373 aaKnown RBP12.2□□□□□ -0.46
SYNE2-215ENST00000554997 SDR42E1Q8WUS8 393 aa12.2□□□□□ -0.46
SYNE2-215ENST00000554997 MAP4K1Q92918 833 aa12.2□□□□□ -0.46
SYNE2-215ENST00000554997 DDRGK1Q96HY6 314 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms