RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SCN4AP35499 1836 aa14.76□□□□□ -0.05
SHMT2-209ENST00000553949 ASTN2O75129 1339 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-209ENST00000553949 HIP1O00291 1037 aa14.76□□□□□ -0.05
SHMT2-209ENST00000553949 MYO1BO43795 1136 aa14.76□□□□□ -0.05
SHMT2-209ENST00000553949 ZMYM1Q5SVZ6 1142 aa14.76□□□□□ -0.05
SHMT2-209ENST00000553949 CDC42EP5Q6NZY7 148 aa14.76□□□□□ -0.05
SHMT2-209ENST00000553949 ZNF784Q8NCA9 323 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-209ENST00000553949 TDRD3Q9H7E2 651 aaKnown RBP14.76□□□□□ -0.05
SHMT2-209ENST00000553949 USP40Q9NVE5 1235 aa14.76□□□□□ -0.05
SHMT2-209ENST00000553949 MAGEB6P1A0A0J9YX57 407 aa14.75□□□□□ -0.05
SHMT2-209ENST00000553949 CLRN2A0PK11 232 aa14.75□□□□□ -0.05
SHMT2-209ENST00000553949 RHBDL3P58872 404 aa14.75□□□□□ -0.05
SHMT2-209ENST00000553949 DYNLL1P63167 89 aaKnown RBP14.75□□□□□ -0.05
SHMT2-209ENST00000553949 SPDYE2Q495Y8 402 aa14.75□□□□□ -0.05
SHMT2-209ENST00000553949 ZC3H15Q8WU90 426 aaKnown RBP14.75□□□□□ -0.05
SHMT2-209ENST00000553949 OSBP2Q969R2 916 aa14.75□□□□□ -0.05
SHMT2-209ENST00000553949 FAM227BQ96M60 508 aa14.75□□□□□ -0.05
SHMT2-209ENST00000553949 RIOK1Q9BRS2 568 aaKnown RBP14.75□□□□□ -0.05
SHMT2-209ENST00000553949 PUS7LQ9H0K6 701 aaKnown RBP14.75□□□□□ -0.05
SHMT2-209ENST00000553949 DIAPH3Q9NSV4 1193 aa14.75□□□□□ -0.05
SHMT2-209ENST00000553949 ZNF70Q9UC06 446 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-209ENST00000553949 ADAMTSL1Q8N6G6 1762 aa14.75□□□□□ -0.05
SHMT2-209ENST00000553949 M0R2C6 588 aa14.74□□□□□ -0.05
SHMT2-209ENST00000553949 MBD4O95243 580 aa14.74□□□□□ -0.05
SHMT2-209ENST00000553949 PLCG2P16885 1265 aa14.74□□□□□ -0.05
SHMT2-209ENST00000553949 NMIQ13287 307 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-209ENST00000553949 ANGEL2Q5VTE6 544 aaKnown RBP14.74□□□□□ -0.05
SHMT2-209ENST00000553949 CERS3Q8IU89 383 aa14.74□□□□□ -0.05
SHMT2-209ENST00000553949 SH3RF3Q8TEJ3 882 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-209ENST00000553949 SEC62Q99442 399 aaKnown RBP14.74□□□□□ -0.05
SHMT2-209ENST00000553949 HELLSQ9NRZ9 838 aa14.74□□□□□ -0.05
SHMT2-209ENST00000553949 GGA3Q9NZ52 723 aa14.74□□□□□ -0.05
SHMT2-209ENST00000553949 PGAP2Q9UHJ9 254 aa14.74□□□□□ -0.05
SHMT2-209ENST00000553949 MYO5AQ9Y4I1 1855 aaKnown RBP14.74□□□□□ -0.05
SHMT2-209ENST00000553949 A0A0D9SFI3 127 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 KIF3CO14782 793 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 POTEIP0CG38 1075 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 POTEJP0CG39 1038 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 CHMLP26374 656 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 CACNB3P54284 484 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 CWC27Q6UX04 472 aaKnown RBP14.73□□□□□ -0.05
SHMT2-209ENST00000553949 LDHDQ86WU2 507 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 LCORLQ8N3X6 602 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 AIDAQ96BJ3 306 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 ARMT1Q9H993 441 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 VEZTQ9HBM0 779 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 TMOD2Q9NZR1 351 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 CLEC11AQ9Y240 323 aa14.73□□□□□ -0.05
SHMT2-209ENST00000553949 GPAA1O43292 621 aa14.72□□□□□ -0.05
SHMT2-209ENST00000553949 CDC45O75419 566 aa14.72□□□□□ -0.05
SHMT2-209ENST00000553949 WDHD1O75717 1129 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-209ENST00000553949 MCMDC2Q4G0Z9 681 aa14.72□□□□□ -0.05
SHMT2-209ENST00000553949 TEX11Q8IYF3 940 aa14.72□□□□□ -0.05
SHMT2-209ENST00000553949 DCPSQ96C86 337 aaKnown RBP14.72□□□□□ -0.05
SHMT2-209ENST00000553949 STRBPQ96SI9 672 aaKnown RBP14.72□□□□□ -0.05
SHMT2-209ENST00000553949 MYH2Q9UKX2 1941 aa14.72□□□□□ -0.05
SHMT2-209ENST00000553949 PITPNM2Q9BZ72 1349 aa14.71□□□□□ -0.05
SHMT2-209ENST00000553949 TCP10L2B9ZVM9 353 aa14.71□□□□□ -0.05
SHMT2-209ENST00000553949 NFIAQ12857 509 aa14.71□□□□□ -0.05
SHMT2-209ENST00000553949 FKBP1CQ5VVH2 108 aa14.71□□□□□ -0.05
SHMT2-209ENST00000553949 CCDC129Q6ZRS4 1044 aa14.71□□□□□ -0.05
SHMT2-209ENST00000553949 APOBEC3FQ8IUX4 373 aaKnown RBP14.71□□□□□ -0.05
SHMT2-209ENST00000553949 IDI2Q9BXS1 227 aa14.71□□□□□ -0.05
SHMT2-209ENST00000553949 CRNKL1Q9BZJ0 848 aaKnown RBP14.71□□□□□ -0.05
SHMT2-209ENST00000553949 SCAF8Q9UPN6 1271 aaKnown RBP14.71□□□□□ -0.05
SHMT2-209ENST00000553949 TNFAIP1Q13829 316 aa14.7□□□□□ -0.06
SHMT2-209ENST00000553949 MAP1SQ66K74 1059 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-209ENST00000553949 ZNF589Q86UQ0 364 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-209ENST00000553949 TGFBRAP1Q8WUH2 860 aa14.7□□□□□ -0.06
SHMT2-209ENST00000553949 RUFY2Q8WXA3 655 aa14.7□□□□□ -0.06
SHMT2-209ENST00000553949 FAM198AQ9UFP1 575 aa14.7□□□□□ -0.06
SHMT2-209ENST00000553949 SLC4A4Q9Y6R1 1079 aa14.7□□□□□ -0.06
SHMT2-209ENST00000553949 MYH7P12883 1935 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 PRKAB2O43741 272 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 NPM3O75607 178 aaKnown RBP14.69□□□□□ -0.06
SHMT2-209ENST00000553949 GNAT2P19087 354 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 USP5P45974 858 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 TCP10Q12799 353 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 PICALMQ13492 652 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 RASA3Q14644 834 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 CASC1Q6TDU7 716 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 KRT26Q7Z3Y9 468 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 FAM83AQ86UY5 434 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 SULF1Q8IWU6 871 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 DEFB129Q9H1M3 183 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 IL25Q9H293 177 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 DDX4Q9NQI0 724 aaKnown RBP14.69□□□□□ -0.06
SHMT2-209ENST00000553949 CNTNAP1P78357 1384 aa14.69□□□□□ -0.06
SHMT2-209ENST00000553949 FLT1P17948 1338 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 CCDC171Q6TFL3 1326 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 RAD50Q92878 1312 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 ADM5C9JUS6 153 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 ENTPD3O75355 529 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 TNNI2P48788 182 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 MFAP1P55081 439 aaKnown RBP14.68□□□□□ -0.06
SHMT2-209ENST00000553949 CHADLQ6NUI6 762 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 CDC37L1Q7L3B6 337 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 USP48Q86UV5 1035 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 MAPKAPK5Q8IW41 473 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 ZFPM1Q8IX07 1006 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms