RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 C2CD4AQ8NCU7 369 aaPredicted RBP5.91□□□□□ -1.46
VRK1-202ENST00000553683 RAD18Q9NS91 495 aa5.91□□□□□ -1.46
VRK1-202ENST00000553683 TRIM37O94972 964 aa5.9□□□□□ -1.46
VRK1-202ENST00000553683 CTSBP07858 339 aa5.9□□□□□ -1.46
VRK1-202ENST00000553683 BMP3P12645 472 aa5.9□□□□□ -1.46
VRK1-202ENST00000553683 FSTP19883 344 aa5.9□□□□□ -1.46
VRK1-202ENST00000553683 ITGB7P26010 798 aa5.9□□□□□ -1.46
VRK1-202ENST00000553683 RPS26P62854 115 aaKnown RBP5.9□□□□□ -1.46
VRK1-202ENST00000553683 PSMD2Q13200 908 aa5.9□□□□□ -1.46
VRK1-202ENST00000553683 PDE3AQ14432 1141 aa5.9□□□□□ -1.46
VRK1-202ENST00000553683 CPSF6Q16630 551 aaKnown RBP eCLIP5.9□□□□□ -1.46
VRK1-202ENST00000553683 ZNF326Q5BKZ1 582 aaKnown RBP5.9□□□□□ -1.46
VRK1-202ENST00000553683 RNF43Q68DV7 783 aa5.9□□□□□ -1.46
VRK1-202ENST00000553683 WDR18Q9BV38 432 aa5.9□□□□□ -1.46
VRK1-202ENST00000553683 NOC4LQ9BVI4 516 aaKnown RBP5.9□□□□□ -1.46
VRK1-202ENST00000553683 IGLV1-40P01703 118 aa5.89□□□□□ -1.47
VRK1-202ENST00000553683 BMP6P22004 513 aa5.89□□□□□ -1.47
VRK1-202ENST00000553683 MAP4P27816 1152 aaKnown RBP5.89□□□□□ -1.47
VRK1-202ENST00000553683 USP11P51784 963 aa5.89□□□□□ -1.47
VRK1-202ENST00000553683 BEND4Q6ZU67 534 aa5.89□□□□□ -1.47
VRK1-202ENST00000553683 DBNDD2Q9BQY9 259 aa5.89□□□□□ -1.47
VRK1-202ENST00000553683 CCDC86Q9H6F5 360 aaKnown RBP5.89□□□□□ -1.47
VRK1-202ENST00000553683 PCDHGC5Q9Y5F6 944 aa5.89□□□□□ -1.47
VRK1-202ENST00000553683 USP31Q70CQ4 1352 aa5.89□□□□□ -1.47
VRK1-202ENST00000553683 SORBS3O60504 671 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 ECEL1O95672 775 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 ZNF157P51786 506 aaPredicted RBP5.88□□□□□ -1.47
VRK1-202ENST00000553683 ID3Q02535 119 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 NFIAQ12857 509 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 MAP7Q14244 749 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 TAF1CQ15572 869 aaPredicted RBP5.88□□□□□ -1.47
VRK1-202ENST00000553683 TPTE2Q6XPS3 522 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 GIMAP7Q8NHV1 300 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 CRELD1Q96HD1 420 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 ATXN3LQ9H3M9 355 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 C7orf69Q9H7B7 122 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 CRIM1Q9NZV1 1036 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 RNF112Q9ULX5 631 aa5.88□□□□□ -1.47
VRK1-202ENST00000553683 TTF2Q9UNY4 1162 aaKnown RBP5.88□□□□□ -1.47
VRK1-202ENST00000553683 FAM95CA0A1B0GW59 222 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 TMPRSS2O15393 492 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 ZNF862O60290 1169 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 DRD2P14416 443 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 ERVK-24P63145 666 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 AKAP4Q5JQC9 854 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 LLGL2Q6P1M3 1020 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 PAOXQ6QHF9 649 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 TRIM42Q8IWZ5 723 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 KCNB2Q92953 911 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 BCL2L13Q9BXK5 485 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 ACSS3Q9H6R3 686 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 ACTL7BQ9Y614 415 aa5.87□□□□□ -1.47
VRK1-202ENST00000553683 MFAP1P55081 439 aaKnown RBP5.86□□□□□ -1.47
VRK1-202ENST00000553683 SGO2Q562F6 1265 aa5.86□□□□□ -1.47
VRK1-202ENST00000553683 ZC3H12AQ5D1E8 599 aaKnown RBP5.86□□□□□ -1.47
VRK1-202ENST00000553683 STK35Q8TDR2 534 aa5.86□□□□□ -1.47
VRK1-202ENST00000553683 KCNF1Q9H3M0 494 aa5.86□□□□□ -1.47
VRK1-202ENST00000553683 MRS2Q9HD23 443 aa5.86□□□□□ -1.47
VRK1-202ENST00000553683 PPP1R9AQ9ULJ8 1098 aa5.86□□□□□ -1.47
VRK1-202ENST00000553683 HMX2A2RU54 273 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 PAGE1O75459 146 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 LIG1P18858 919 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 ASPAP45381 313 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 CCDC85BQ15834 202 aaPredicted RBP5.85□□□□□ -1.47
VRK1-202ENST00000553683 PCNX4Q63HM2 1172 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 MAP1SQ66K74 1059 aaPredicted RBP5.85□□□□□ -1.47
VRK1-202ENST00000553683 CDPF1Q6NVV7 123 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 DYMQ7RTS9 669 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 METTL22Q9BUU2 404 aaPredicted RBP5.85□□□□□ -1.47
VRK1-202ENST00000553683 CBX8Q9HC52 389 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 AP4E1Q9UPM8 1137 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 TACC3Q9Y6A5 838 aa5.85□□□□□ -1.47
VRK1-202ENST00000553683 CELA3AP09093 270 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 CTSHP09668 335 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 RXRBP28702 533 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 CYP27A1Q02318 531 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 ZMYM1Q5SVZ6 1142 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 DIEXFQ68CQ4 756 aaKnown RBP5.84□□□□□ -1.47
VRK1-202ENST00000553683 INTS5Q6P9B9 1019 aaKnown RBP5.84□□□□□ -1.47
VRK1-202ENST00000553683 SEZ6L2Q6UXD5 910 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 AGMOQ6ZNB7 445 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 CCDC84Q86UT8 332 aaPredicted RBP5.84□□□□□ -1.47
VRK1-202ENST00000553683 RNF214Q8ND24 703 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 GPBAR1Q8TDU6 330 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 FBLIM1Q8WUP2 373 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 WDR89Q96FK6 387 aaPredicted RBP5.84□□□□□ -1.47
VRK1-202ENST00000553683 FANCD2OSQ96PS1 177 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 SEMA6CQ9H3T2 930 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 DISC1Q9NRI5 854 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 FAM105AQ9NUU6 356 aa5.84□□□□□ -1.47
VRK1-202ENST00000553683 RBM47A0AV96 593 aaKnown RBP5.83□□□□□ -1.48
VRK1-202ENST00000553683 FANCGO15287 622 aa5.83□□□□□ -1.48
VRK1-202ENST00000553683 FBXO24O75426 580 aa5.83□□□□□ -1.48
VRK1-202ENST00000553683 RING1Q06587 406 aa5.83□□□□□ -1.48
VRK1-202ENST00000553683 PWP1Q13610 501 aa5.83□□□□□ -1.48
VRK1-202ENST00000553683 MRPL58Q14197 206 aaKnown RBP5.83□□□□□ -1.48
VRK1-202ENST00000553683 TTBK2Q6IQ55 1244 aa5.83□□□□□ -1.48
VRK1-202ENST00000553683 ZDHHC13Q8IUH4 622 aa5.83□□□□□ -1.48
VRK1-202ENST00000553683 ACSBG1Q96GR2 724 aa5.83□□□□□ -1.48
VRK1-202ENST00000553683 ZC3H12CQ9C0D7 883 aaKnown RBP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms