RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CYB5R4Q7L1T6 521 aa30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 FLAD1Q8NFF5 587 aa30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 STAG1Q8WVM7 1258 aa30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 CRAMP1Q96RY5 1269 aa30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 BRPF3Q9ULD4 1205 aa30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 ANGEL1Q9UNK9 670 aaKnown RBP30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 DHX16O60231 1041 aaKnown RBP30.95■■■□□ 2.55
CCDC88C-205ENST00000553403 ZNF445P59923 1031 aa30.95■■■□□ 2.55
CCDC88C-205ENST00000553403 TXNRD3Q86VQ6 643 aa30.95■■■□□ 2.55
CCDC88C-205ENST00000553403 NLGN1Q8N2Q7 840 aa30.95■■■□□ 2.55
CCDC88C-205ENST00000553403 NSUN4Q96CB9 384 aaKnown RBP30.95■■■□□ 2.55
CCDC88C-205ENST00000553403 KRT23Q9C075 422 aa30.95■■■□□ 2.55
CCDC88C-205ENST00000553403 GDPD2Q9HCC8 539 aa30.95■■■□□ 2.55
CCDC88C-205ENST00000553403 STK32BQ9NY57 414 aa30.95■■■□□ 2.55
CCDC88C-205ENST00000553403 NEDD4P46934 1319 aa30.95■■■□□ 2.54
CCDC88C-205ENST00000553403 B4E1Z4 1266 aa30.94■■■□□ 2.54
CCDC88C-205ENST00000553403 SH2B2O14492 632 aaPredicted RBP30.94■■■□□ 2.54
CCDC88C-205ENST00000553403 SPTY2D1Q68D10 685 aaPredicted RBP30.94■■■□□ 2.54
CCDC88C-205ENST00000553403 MAST2Q6P0Q8 1798 aa30.94■■■□□ 2.54
CCDC88C-205ENST00000553403 ATP2B4P23634 1241 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 ZNF384Q8TF68 577 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 DDX11Q96FC9 970 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 NCOA5Q9HCD5 579 aaKnown RBP30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 MRE11P49959 708 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 DNM1Q05193 864 aaKnown RBP30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 CTDSPL2Q05D32 466 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 GIMAP6Q6P9H5 292 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 MFSD6Q6ZSS7 791 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 RNF41Q9H4P4 317 aaPredicted RBP30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 ANAPC4Q9UJX5 808 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 HPS5Q9UPZ3 1129 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 TCHHQ07283 1943 aa30.93■■■□□ 2.54
CCDC88C-205ENST00000553403 CHD4Q14839 1912 aa30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 GOLGA8BA8MQT2 603 aa30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 MECOMQ03112 1051 aa30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 CHAF1AQ13111 956 aaPredicted RBP30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 ZSCAN23Q3MJ62 389 aa30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 TMC4Q7Z404 712 aa30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 ZNF804AQ7Z570 1209 aa30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 TDRD7Q8NHU6 1098 aaKnown RBP30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 MTA3Q9BTC8 594 aa30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 BRIP1Q9BX63 1249 aa30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 ANO8Q9HCE9 1232 aaPredicted RBP30.92■■■□□ 2.54
CCDC88C-205ENST00000553403 H3BQV1 296 aa30.91■■■□□ 2.54
CCDC88C-205ENST00000553403 GPSM2P81274 684 aa30.91■■■□□ 2.54
CCDC88C-205ENST00000553403 IFFO2Q5TF58 517 aa30.91■■■□□ 2.54
CCDC88C-205ENST00000553403 COL23A1Q86Y22 540 aaPredicted RBP30.91■■■□□ 2.54
CCDC88C-205ENST00000553403 WDR66Q8TBY9 1149 aa30.91■■■□□ 2.54
CCDC88C-205ENST00000553403 NSFL1CQ9UNZ2 370 aaKnown RBP30.91■■■□□ 2.54
CCDC88C-205ENST00000553403 UBE2HP62256 183 aa30.9■■■□□ 2.54
CCDC88C-205ENST00000553403 KRT85P78386 507 aa30.9■■■□□ 2.54
CCDC88C-205ENST00000553403 IGDCC4Q8TDY8 1250 aa30.9■■■□□ 2.54
CCDC88C-205ENST00000553403 ZSCAN16Q9H4T2 348 aaPredicted RBP30.9■■■□□ 2.54
CCDC88C-205ENST00000553403 GADD45BO75293 160 aaPredicted RBP30.9■■■□□ 2.54
CCDC88C-205ENST00000553403 SYAP1Q96A49 352 aaPredicted RBP30.9■■■□□ 2.54
CCDC88C-205ENST00000553403 NRXN2Q9P2S2 1712 aa30.89■■■□□ 2.54
CCDC88C-205ENST00000553403 LIFRP42702 1097 aa30.89■■■□□ 2.54
CCDC88C-205ENST00000553403 PPARAQ07869 468 aa30.89■■■□□ 2.54
CCDC88C-205ENST00000553403 FERMT3Q86UX7 667 aa30.89■■■□□ 2.54
CCDC88C-205ENST00000553403 NKX2-3Q8TAU0 364 aa30.89■■■□□ 2.54
CCDC88C-205ENST00000553403 PODXL2Q9NZ53 605 aa30.89■■■□□ 2.54
CCDC88C-205ENST00000553403 TMEM63CQ9P1W3 806 aa30.89■■■□□ 2.54
CCDC88C-205ENST00000553403 TACC3Q9Y6A5 838 aa30.89■■■□□ 2.54
CCDC88C-205ENST00000553403 FIBPO43427 364 aa30.88■■■□□ 2.53
CCDC88C-205ENST00000553403 DYNLL1P63167 89 aaKnown RBP30.88■■■□□ 2.53
CCDC88C-205ENST00000553403 RESTQ13127 1097 aa30.88■■■□□ 2.53
CCDC88C-205ENST00000553403 SGMS1Q86VZ5 419 aa30.88■■■□□ 2.53
CCDC88C-205ENST00000553403 GAS2L3Q86XJ1 694 aa30.88■■■□□ 2.53
CCDC88C-205ENST00000553403 RBM27Q9P2N5 1060 aaKnown RBP30.88■■■□□ 2.53
CCDC88C-205ENST00000553403 GGA1Q9UJY5 639 aa30.88■■■□□ 2.53
CCDC88C-205ENST00000553403 SDR42E1Q8WUS8 393 aa30.87■■■□□ 2.53
CCDC88C-205ENST00000553403 GRPEL1Q9HAV7 217 aa30.87■■■□□ 2.53
CCDC88C-205ENST00000553403 SPON1Q9HCB6 807 aa30.87■■■□□ 2.53
CCDC88C-205ENST00000553403 ZSWIM5Q9P217 1185 aa30.87■■■□□ 2.53
CCDC88C-205ENST00000553403 SLC15A2Q16348 729 aa30.87■■■□□ 2.53
CCDC88C-205ENST00000553403 LY9Q9HBG7 655 aa30.87■■■□□ 2.53
CCDC88C-205ENST00000553403 CCDC88AQ3V6T2 1871 aa30.87■■■□□ 2.53
CCDC88C-205ENST00000553403 KIAA1551Q9HCM1 1747 aa30.86■■■□□ 2.53
CCDC88C-205ENST00000553403 KDM4AO75164 1064 aa30.86■■■□□ 2.53
CCDC88C-205ENST00000553403 UFL1O94874 794 aa30.86■■■□□ 2.53
CCDC88C-205ENST00000553403 XRCC6P12956 609 aaKnown RBP eCLIP30.86■■■□□ 2.53
CCDC88C-205ENST00000553403 PRDX5P30044 214 aa30.86■■■□□ 2.53
CCDC88C-205ENST00000553403 TMEM67Q5HYA8 995 aa30.86■■■□□ 2.53
CCDC88C-205ENST00000553403 RGS22Q8NE09 1264 aa30.86■■■□□ 2.53
CCDC88C-205ENST00000553403 INCENPQ9NQS7 918 aa30.86■■■□□ 2.53
CCDC88C-205ENST00000553403 ELP1O95163 1332 aa30.85■■■□□ 2.53
CCDC88C-205ENST00000553403 SLC51AQ86UW1 340 aa30.85■■■□□ 2.53
CCDC88C-205ENST00000553403 CRNKL1Q9BZJ0 848 aaKnown RBP30.85■■■□□ 2.53
CCDC88C-205ENST00000553403 LRRC37AA6NMS7 1700 aa30.85■■■□□ 2.53
CCDC88C-205ENST00000553403 DUOX1Q9NRD9 1551 aa30.85■■■□□ 2.53
CCDC88C-205ENST00000553403 FDPSP14324 419 aaKnown RBP30.84■■■□□ 2.53
CCDC88C-205ENST00000553403 APOA5Q6Q788 366 aa30.84■■■□□ 2.53
CCDC88C-205ENST00000553403 SCAND2PQ9GZW5 306 aaPredicted RBP30.84■■■□□ 2.53
CCDC88C-205ENST00000553403 PPP1R1BQ9UD71 204 aaPredicted RBP30.84■■■□□ 2.53
CCDC88C-205ENST00000553403 CPLX1O14810 134 aa30.84■■■□□ 2.53
CCDC88C-205ENST00000553403 IFIT3O14879 490 aaKnown RBP30.84■■■□□ 2.53
CCDC88C-205ENST00000553403 PCP11498 1178 aaKnown RBP30.84■■■□□ 2.53
CCDC88C-205ENST00000553403 DZIP1Q86YF9 867 aaKnown RBP30.84■■■□□ 2.53
CCDC88C-205ENST00000553403 METAP2P50579 478 aaKnown RBP eCLIP30.83■■■□□ 2.53
CCDC88C-205ENST00000553403 SART3Q15020 963 aaKnown RBP30.83■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms