RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ZBTB47Q9UFB7 747 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-226ENST00000553011 ABT1Q9ULW3 272 aaKnown RBP17.19■□□□□ 0.34
PTCH1-226ENST00000553011 CNTNAP1P78357 1384 aa17.18■□□□□ 0.34
PTCH1-226ENST00000553011 PAPPA2Q9BXP8 1791 aa17.18■□□□□ 0.34
PTCH1-226ENST00000553011 LDHCP07864 332 aa17.18■□□□□ 0.34
PTCH1-226ENST00000553011 TNFAIP1Q13829 316 aa17.18■□□□□ 0.34
PTCH1-226ENST00000553011 CDAN1Q8IWY9 1227 aa17.18■□□□□ 0.34
PTCH1-226ENST00000553011 GPATCH3Q96I76 525 aa17.18■□□□□ 0.34
PTCH1-226ENST00000553011 HAUS7Q99871 368 aa17.18■□□□□ 0.34
PTCH1-226ENST00000553011 GBA2Q9HCG7 927 aaPredicted RBP17.18■□□□□ 0.34
PTCH1-226ENST00000553011 PPP2R3BQ9Y5P8 575 aa17.18■□□□□ 0.34
PTCH1-226ENST00000553011 GPR75-ASB3A0A0A6YYF3 556 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 SSC5DA1L4H1 1573 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 CENPBP07199 599 aaPredicted RBP17.17■□□□□ 0.34
PTCH1-226ENST00000553011 NFIAQ12857 509 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 TTF1Q15361 905 aaPredicted RBP17.17■□□□□ 0.34
PTCH1-226ENST00000553011 ADGRA1Q86SQ6 560 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 LNPKQ9C0E8 428 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 TMEM39BQ9GZU3 492 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 PAG1Q9NWQ8 432 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 MKRN1Q9UHC7 482 aaKnown RBP17.17■□□□□ 0.34
PTCH1-226ENST00000553011 TLL2Q9Y6L7 1015 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 SALL3Q9BXA9 1300 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 FOCADQ5VW36 1801 aa17.17■□□□□ 0.34
PTCH1-226ENST00000553011 MX1P20591 662 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 CYP7A1P22680 504 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 TNNI2P48788 182 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 RHBDL3P58872 404 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 MAP3K12Q12852 859 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 NBPF12Q5TAG4 269 aaPredicted RBP17.16■□□□□ 0.34
PTCH1-226ENST00000553011 FKBP1CQ5VVH2 108 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 MOB2Q70IA6 237 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 SAPCD2Q86UD0 394 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 DNAJC5GQ8N7S2 189 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 MAGEB6Q8N7X4 407 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 C2orf69Q8N8R5 385 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 TEPSINQ96N21 525 aa17.16■□□□□ 0.34
PTCH1-226ENST00000553011 RFX7Q2KHR2 1363 aa17.15■□□□□ 0.34
PTCH1-226ENST00000553011 IGSF3O75054 1194 aa17.15■□□□□ 0.34
PTCH1-226ENST00000553011 NF2P35240 595 aa17.15■□□□□ 0.34
PTCH1-226ENST00000553011 TCP10Q12799 353 aa17.15■□□□□ 0.34
PTCH1-226ENST00000553011 PRKG1Q13976 671 aa17.15■□□□□ 0.34
PTCH1-226ENST00000553011 FAM198AQ9UFP1 575 aa17.15■□□□□ 0.34
PTCH1-226ENST00000553011 FZD1Q9UP38 647 aa17.15■□□□□ 0.34
PTCH1-226ENST00000553011 TTC41PQ6P2S7 1318 aa17.15■□□□□ 0.34
PTCH1-226ENST00000553011 RASSF10A6NK89 507 aa17.14■□□□□ 0.33
PTCH1-226ENST00000553011 PDE6AP16499 860 aa17.14■□□□□ 0.33
PTCH1-226ENST00000553011 HUNKP57058 714 aa17.14■□□□□ 0.33
PTCH1-226ENST00000553011 NUCB1Q02818 461 aa17.14■□□□□ 0.33
PTCH1-226ENST00000553011 TTLL12Q14166 644 aaPredicted RBP17.14■□□□□ 0.33
PTCH1-226ENST00000553011 DEFB115Q30KQ5 88 aa17.14■□□□□ 0.33
PTCH1-226ENST00000553011 FAM83AQ86UY5 434 aa17.14■□□□□ 0.33
PTCH1-226ENST00000553011 CHD1LQ86WJ1 897 aa17.14■□□□□ 0.33
PTCH1-226ENST00000553011 PI4K2BQ8TCG2 481 aa17.14■□□□□ 0.33
PTCH1-226ENST00000553011 AATFQ9NY61 560 aaKnown RBP eCLIP17.14■□□□□ 0.33
PTCH1-226ENST00000553011 OTOFQ9HC10 1997 aa17.14■□□□□ 0.33
PTCH1-226ENST00000553011 WDHD1O75717 1129 aaPredicted RBP17.13■□□□□ 0.33
PTCH1-226ENST00000553011 MAP4K4O95819 1239 aaPredicted RBP17.13■□□□□ 0.33
PTCH1-226ENST00000553011 RGS3P49796 1198 aa17.13■□□□□ 0.33
PTCH1-226ENST00000553011 DYNLL1P63167 89 aaKnown RBP17.13■□□□□ 0.33
PTCH1-226ENST00000553011 SUPT20HL1Q3ZLR7 823 aa17.13■□□□□ 0.33
PTCH1-226ENST00000553011 SLC9C2Q5TAH2 1124 aa17.13■□□□□ 0.33
PTCH1-226ENST00000553011 ZFPM1Q8IX07 1006 aa17.13■□□□□ 0.33
PTCH1-226ENST00000553011 MIGA1Q8NAN2 632 aa17.13■□□□□ 0.33
PTCH1-226ENST00000553011 SH3RF3Q8TEJ3 882 aaPredicted RBP17.13■□□□□ 0.33
PTCH1-226ENST00000553011 FAM151AQ8WW52 585 aa17.13■□□□□ 0.33
PTCH1-226ENST00000553011 KLRG1Q96E93 195 aa17.13■□□□□ 0.33
PTCH1-226ENST00000553011 NOL10Q9BSC4 688 aaKnown RBP17.13■□□□□ 0.33
PTCH1-226ENST00000553011 IDI2Q9BXS1 227 aa17.13■□□□□ 0.33
PTCH1-226ENST00000553011 DDX4Q9NQI0 724 aaKnown RBP17.13■□□□□ 0.33
PTCH1-226ENST00000553011 MYH1P12882 1939 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 UBE2Q2LH0YL09 131 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 ERC2O15083 957 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 CHGBP05060 677 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 PDE1AP54750 535 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 PPP4CP60510 307 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 FKBP1BP68106 108 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 PICALMQ13492 652 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 SLFNL1Q499Z3 407 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 PAXIP1Q6ZW49 1069 aaPredicted RBP17.12■□□□□ 0.33
PTCH1-226ENST00000553011 TEX11Q8IYF3 940 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 STAP2Q9UGK3 403 aa17.12■□□□□ 0.33
PTCH1-226ENST00000553011 RPAP1Q9BWH6 1393 aaPredicted RBP17.12■□□□□ 0.33
PTCH1-226ENST00000553011 GLRX3O76003 335 aaKnown RBP17.11■□□□□ 0.33
PTCH1-226ENST00000553011 BAG3O95817 575 aa17.11■□□□□ 0.33
PTCH1-226ENST00000553011 VEGFBP49765 207 aa17.11■□□□□ 0.33
PTCH1-226ENST00000553011 CYP4F22Q6NT55 531 aa17.11■□□□□ 0.33
PTCH1-226ENST00000553011 ANGEL1Q9UNK9 670 aaKnown RBP17.11■□□□□ 0.33
PTCH1-226ENST00000553011 ZNF532Q9HCE3 1301 aa17.11■□□□□ 0.33
PTCH1-226ENST00000553011 TCRBV5S4A2TA0A5A2 114 aa17.1■□□□□ 0.33
PTCH1-226ENST00000553011 ENTPD3O75355 529 aa17.1■□□□□ 0.33
PTCH1-226ENST00000553011 PLCG2P16885 1265 aa17.1■□□□□ 0.33
PTCH1-226ENST00000553011 ADD2P35612 726 aa17.1■□□□□ 0.33
PTCH1-226ENST00000553011 GRM1Q13255 1194 aa17.1■□□□□ 0.33
PTCH1-226ENST00000553011 PPP1R12BO60237 982 aaPredicted RBP17.09■□□□□ 0.33
PTCH1-226ENST00000553011 NEFLP07196 543 aa17.09■□□□□ 0.33
PTCH1-226ENST00000553011 TMED8Q6PL24 325 aaPredicted RBP17.09■□□□□ 0.33
PTCH1-226ENST00000553011 SH3BP5LQ7L8J4 393 aa17.09■□□□□ 0.33
PTCH1-226ENST00000553011 ARMC9Q7Z3E5 817 aa17.09■□□□□ 0.33
PTCH1-226ENST00000553011 PLEKHM2Q8IWE5 1019 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms