RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 TSPYL6Q8N831 410 aa18.5■□□□□ 0.55
VPS29-209ENST00000551655 FLT3LGP49771 235 aa18.49■□□□□ 0.55
VPS29-209ENST00000551655 PPATQ06203 517 aa18.49■□□□□ 0.55
VPS29-209ENST00000551655 GCKRQ14397 625 aa18.49■□□□□ 0.55
VPS29-209ENST00000551655 CCDC30Q5VVM6 783 aa18.49■□□□□ 0.55
VPS29-209ENST00000551655 ZNF594Q96JF6 807 aaPredicted RBP18.49■□□□□ 0.55
VPS29-209ENST00000551655 TDHQ8IZJ6 230 aa18.48■□□□□ 0.55
VPS29-209ENST00000551655 TDRD7Q8NHU6 1098 aaKnown RBP18.48■□□□□ 0.55
VPS29-209ENST00000551655 CRISPLD2Q9H0B8 497 aa18.48■□□□□ 0.55
VPS29-209ENST00000551655 PAK6Q9NQU5 681 aaPredicted RBP18.48■□□□□ 0.55
VPS29-209ENST00000551655 CHMP3Q9Y3E7 222 aa18.48■□□□□ 0.55
VPS29-209ENST00000551655 PRUNE2Q8WUY3 3088 aa18.48■□□□□ 0.55
VPS29-209ENST00000551655 DDX60LQ5H9U9 1706 aaKnown RBP18.47■□□□□ 0.55
VPS29-209ENST00000551655 GPAT2Q6NUI2 795 aa18.47■□□□□ 0.55
VPS29-209ENST00000551655 NECAB2Q7Z6G3 386 aa18.47■□□□□ 0.55
VPS29-209ENST00000551655 GUCD1Q96NT3 240 aa18.47■□□□□ 0.55
VPS29-209ENST00000551655 IFT57Q9NWB7 429 aa18.47■□□□□ 0.55
VPS29-209ENST00000551655 TAOK2Q9UL54 1235 aa18.47■□□□□ 0.55
VPS29-209ENST00000551655 IQSEC3Q9UPP2 1182 aaPredicted RBP18.47■□□□□ 0.55
VPS29-209ENST00000551655 KCNH4Q9UQ05 1017 aa18.47■□□□□ 0.55
VPS29-209ENST00000551655 FAM161BQ96MY7 647 aa18.46■□□□□ 0.55
VPS29-209ENST00000551655 PARK7Q99497 189 aaKnown RBP18.46■□□□□ 0.55
VPS29-209ENST00000551655 RPTORQ8N122 1335 aa18.46■□□□□ 0.55
VPS29-209ENST00000551655 FOXO4P98177 505 aa18.45■□□□□ 0.54
VPS29-209ENST00000551655 ZNF341Q9BYN7 854 aa18.45■□□□□ 0.54
VPS29-209ENST00000551655 UBE2OQ9C0C9 1292 aaKnown RBP18.45■□□□□ 0.54
VPS29-209ENST00000551655 DOCK3Q8IZD9 2030 aa18.44■□□□□ 0.54
VPS29-209ENST00000551655 GNAI1P63096 354 aa18.44■□□□□ 0.54
VPS29-209ENST00000551655 CHAF1AQ13111 956 aaPredicted RBP18.44■□□□□ 0.54
VPS29-209ENST00000551655 IFIT5Q13325 482 aaKnown RBP18.44■□□□□ 0.54
VPS29-209ENST00000551655 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.44■□□□□ 0.54
VPS29-209ENST00000551655 PRDM6Q9NQX0 595 aa18.44■□□□□ 0.54
VPS29-209ENST00000551655 ADAMTS8Q9UP79 889 aa18.44■□□□□ 0.54
VPS29-209ENST00000551655 HIBADHP31937 336 aaKnown RBP18.43■□□□□ 0.54
VPS29-209ENST00000551655 PXYLP1Q8TE99 480 aa18.43■□□□□ 0.54
VPS29-209ENST00000551655 FAM84BQ96KN1 310 aaPredicted RBP18.43■□□□□ 0.54
VPS29-209ENST00000551655 TNPO2O14787 897 aaKnown RBP18.42■□□□□ 0.54
VPS29-209ENST00000551655 EPHA10Q5JZY3 1008 aa18.42■□□□□ 0.54
VPS29-209ENST00000551655 DCAF15Q66K64 600 aa18.42■□□□□ 0.54
VPS29-209ENST00000551655 FAM83AQ86UY5 434 aa18.42■□□□□ 0.54
VPS29-209ENST00000551655 IRF5Q13568 498 aa18.41■□□□□ 0.54
VPS29-209ENST00000551655 WDR43Q15061 677 aaKnown RBP eCLIP18.41■□□□□ 0.54
VPS29-209ENST00000551655 LDHAL6AQ6ZMR3 332 aa18.41■□□□□ 0.54
VPS29-209ENST00000551655 TEKT1Q969V4 418 aa18.41■□□□□ 0.54
VPS29-209ENST00000551655 CNNM1Q9NRU3 951 aa18.41■□□□□ 0.54
VPS29-209ENST00000551655 TMOD2Q9NZR1 351 aa18.41■□□□□ 0.54
VPS29-209ENST00000551655 AK9Q5TCS8 1911 aa18.41■□□□□ 0.54
VPS29-209ENST00000551655 TRIM32Q13049 653 aa18.4■□□□□ 0.54
VPS29-209ENST00000551655 APOBEC3HQ6NTF7 200 aaKnown RBP18.4■□□□□ 0.54
VPS29-209ENST00000551655 LMBR1LQ6UX01 489 aa18.4■□□□□ 0.54
VPS29-209ENST00000551655 STK31Q9BXU1 1019 aa18.4■□□□□ 0.54
VPS29-209ENST00000551655 RPAP1Q9BWH6 1393 aaPredicted RBP18.4■□□□□ 0.54
VPS29-209ENST00000551655 TAF7LQ5H9L4 462 aa18.39■□□□□ 0.53
VPS29-209ENST00000551655 TSR2Q969E8 191 aaKnown RBP18.39■□□□□ 0.53
VPS29-209ENST00000551655 HOOK2Q96ED9 719 aa18.39■□□□□ 0.53
VPS29-209ENST00000551655 ZDHHC15Q96MV8 337 aa18.39■□□□□ 0.53
VPS29-209ENST00000551655 MYH16Q9H6N6 1097 aa18.39■□□□□ 0.53
VPS29-209ENST00000551655 ZNF112Q9UJU3 913 aa18.39■□□□□ 0.53
VPS29-209ENST00000551655 SLC4A2P04920 1241 aa18.38■□□□□ 0.53
VPS29-209ENST00000551655 MDM2Q00987 491 aaPredicted RBP18.38■□□□□ 0.53
VPS29-209ENST00000551655 TCP10Q12799 353 aa18.38■□□□□ 0.53
VPS29-209ENST00000551655 GADL1Q6ZQY3 521 aa18.38■□□□□ 0.53
VPS29-209ENST00000551655 PUS3Q9BZE2 481 aaKnown RBP18.38■□□□□ 0.53
VPS29-209ENST00000551655 NBPF3Q9H094 633 aa18.38■□□□□ 0.53
VPS29-209ENST00000551655 C11orf49Q9H6J7 331 aa18.38■□□□□ 0.53
VPS29-209ENST00000551655 RAPGEFL1Q9UHV5 662 aa18.38■□□□□ 0.53
VPS29-209ENST00000551655 PTPRFP10586 1907 aa18.37■□□□□ 0.53
VPS29-209ENST00000551655 POTEB2H3BUK9 544 aa18.37■□□□□ 0.53
VPS29-209ENST00000551655 APAF1O14727 1248 aa18.37■□□□□ 0.53
VPS29-209ENST00000551655 HDLBPQ00341 1268 aaKnown RBP18.37■□□□□ 0.53
VPS29-209ENST00000551655 CACNB1Q02641 598 aaPredicted RBP18.37■□□□□ 0.53
VPS29-209ENST00000551655 UBE4AQ14139 1066 aa18.37■□□□□ 0.53
VPS29-209ENST00000551655 LINS1Q8NG48 757 aa18.37■□□□□ 0.53
VPS29-209ENST00000551655 DNAAF4Q8WXU2 420 aa18.37■□□□□ 0.53
VPS29-209ENST00000551655 PFASO15067 1338 aa18.37■□□□□ 0.53
VPS29-209ENST00000551655 FLIIQ13045 1269 aa18.36■□□□□ 0.53
VPS29-209ENST00000551655 RALBP1Q15311 655 aa18.36■□□□□ 0.53
VPS29-209ENST00000551655 CCDC57Q2TAC2 916 aa18.36■□□□□ 0.53
VPS29-209ENST00000551655 NOL9Q5SY16 702 aaKnown RBP18.36■□□□□ 0.53
VPS29-209ENST00000551655 FKBP1CQ5VVH2 108 aa18.36■□□□□ 0.53
VPS29-209ENST00000551655 DNAH12Q6ZR08 3092 aa18.36■□□□□ 0.53
VPS29-209ENST00000551655 ANKLE1Q8NAG6 615 aa18.36■□□□□ 0.53
VPS29-209ENST00000551655 MUC3AQ02505 3323 aa18.35■□□□□ 0.53
VPS29-209ENST00000551655 COL2A1P02458 1487 aaPredicted RBP18.35■□□□□ 0.53
VPS29-209ENST00000551655 A0A0G2JLL6 359 aaPredicted RBP18.35■□□□□ 0.53
VPS29-209ENST00000551655 CXCL11O14625 94 aa18.35■□□□□ 0.53
VPS29-209ENST00000551655 CAPN2P17655 700 aa18.35■□□□□ 0.53
VPS29-209ENST00000551655 NFIAQ12857 509 aa18.35■□□□□ 0.53
VPS29-209ENST00000551655 FKBP5Q13451 457 aaPredicted RBP18.35■□□□□ 0.53
VPS29-209ENST00000551655 PRRT2Q7Z6L0 340 aaPredicted RBP18.35■□□□□ 0.53
VPS29-209ENST00000551655 ANKRD13CQ8N6S4 541 aa18.35■□□□□ 0.53
VPS29-209ENST00000551655 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.35■□□□□ 0.53
VPS29-209ENST00000551655 CDH23Q9H251 3354 aa18.35■□□□□ 0.53
VPS29-209ENST00000551655 SLURP2P0DP57 97 aa18.34■□□□□ 0.53
VPS29-209ENST00000551655 COL9A1P20849 921 aa18.34■□□□□ 0.53
VPS29-209ENST00000551655 FBXO33Q7Z6M2 555 aa18.34■□□□□ 0.53
VPS29-209ENST00000551655 SMCR8Q8TEV9 937 aaPredicted RBP18.34■□□□□ 0.53
VPS29-209ENST00000551655 FAM151AQ8WW52 585 aa18.34■□□□□ 0.53
VPS29-209ENST00000551655 ZHX2Q9Y6X8 837 aa18.34■□□□□ 0.53
VPS29-209ENST00000551655 TTC28Q96AY4 2481 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms