RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 CACNB3P54284 484 aa13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 TFCP2Q12800 502 aa13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 GORABQ5T7V8 394 aa13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 FBXO46Q6PJ61 603 aaPredicted RBP13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 ERO1BQ86YB8 467 aa13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 FTSJ3Q8IY81 847 aaKnown RBP13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 CLUAP1Q96AJ1 413 aa13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 FAM163AQ96GL9 167 aaPredicted RBP13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 XAGE2Q96GT9 111 aa13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 ERO1AQ96HE7 468 aa13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 USP40Q9NVE5 1235 aa13.44□□□□□ -0.26
VTI1BP3-201ENST00000550220 SPDYE5A6NIY4 337 aa13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 IGF2BP3O00425 579 aaKnown RBP eCLIP13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 CETPP11597 493 aa13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 DIXDC1Q155Q3 683 aa13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 CDC42EP5Q6NZY7 148 aa13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 DZIP1Q86YF9 867 aaKnown RBP13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 MS4A4AQ96JQ5 239 aa13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 NEUROD6Q96NK8 337 aa13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 WRNIP1Q96S55 665 aa13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 ZCCHC17Q9NP64 241 aaKnown RBP13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 HPS5Q9UPZ3 1129 aa13.43□□□□□ -0.26
VTI1BP3-201ENST00000550220 IGSF3O75054 1194 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 ENTPD3O75355 529 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 MAP4K4O95819 1239 aaPredicted RBP13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 LDHCP07864 332 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 ADORA1P30542 326 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 GJA5P36382 358 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 PPATQ06203 517 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 SNAPC2Q13487 334 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 RASGRF1Q13972 1273 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 ERICH6Q7L0X2 663 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 CDAN1Q8IWY9 1227 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 TMEM57Q8N5G2 664 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 PTPN18Q99952 460 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 IDI2Q9BXS1 227 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 ZFYVE28Q9HCC9 887 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 ABCF2Q9UG63 623 aa13.42□□□□□ -0.26
VTI1BP3-201ENST00000550220 ECM29Q5VYK3 1845 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 CCL15-CCL14A0A0B4J2E2 113 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 UQCRFS1P1P0C7P4 283 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 MS4A1P11836 297 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 GSTO1P78417 241 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 ATP8B2P98198 1209 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 SP3Q02447 781 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 CRHR2Q13324 411 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 PPIL2Q13356 520 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 CCL15Q16663 113 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 OTUD5Q96G74 571 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 R3HDMLQ9H3Y0 253 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 GPR108Q9NPR9 543 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 ZNF112Q9UJU3 913 aa13.41□□□□□ -0.26
VTI1BP3-201ENST00000550220 GAKO14976 1311 aa13.4□□□□□ -0.26
VTI1BP3-201ENST00000550220 ZBED9Q6R2W3 1325 aa13.4□□□□□ -0.26
VTI1BP3-201ENST00000550220 TCP10Q12799 353 aa13.4□□□□□ -0.26
VTI1BP3-201ENST00000550220 MIGA2Q7L4E1 593 aa13.4□□□□□ -0.26
VTI1BP3-201ENST00000550220 SPATA5Q8NB90 893 aa13.4□□□□□ -0.26
VTI1BP3-201ENST00000550220 SSH3Q8TE77 659 aa13.4□□□□□ -0.26
VTI1BP3-201ENST00000550220 BRI3BPQ8WY22 251 aa13.4□□□□□ -0.26
VTI1BP3-201ENST00000550220 TRIM17Q9Y577 477 aa13.4□□□□□ -0.26
VTI1BP3-201ENST00000550220 SNCAIPQ9Y6H5 919 aa13.4□□□□□ -0.26
VTI1BP3-201ENST00000550220 PNMA6EA0A0J9YXQ4 647 aa13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 NPM3O75607 178 aaKnown RBP13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 ARID4AP29374 1257 aaPredicted RBP13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 NFIAQ12857 509 aa13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 OS9Q13438 667 aaPredicted RBP13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 POLA2Q14181 598 aa13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 TAF1CQ15572 869 aaPredicted RBP13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 CCDC158Q5M9N0 1113 aa13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 ITPRIPQ8IWB1 547 aa13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 ZKSCAN4Q969J2 545 aaPredicted RBP13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 FAM198AQ9UFP1 575 aa13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 ARAP2Q8WZ64 1704 aa13.39□□□□□ -0.27
VTI1BP3-201ENST00000550220 GPR75-ASB3A0A0A6YYF3 556 aa13.38□□□□□ -0.27
VTI1BP3-201ENST00000550220 IRF6O14896 467 aa13.38□□□□□ -0.27
VTI1BP3-201ENST00000550220 ZBTB7BO15156 539 aaPredicted RBP13.38□□□□□ -0.27
VTI1BP3-201ENST00000550220 SURF6O75683 361 aaKnown RBP13.38□□□□□ -0.27
VTI1BP3-201ENST00000550220 NOL9Q5SY16 702 aaKnown RBP13.38□□□□□ -0.27
VTI1BP3-201ENST00000550220 OTOP1Q7RTM1 612 aa13.38□□□□□ -0.27
VTI1BP3-201ENST00000550220 CNKSR2Q8WXI2 1034 aa13.38□□□□□ -0.27
VTI1BP3-201ENST00000550220 EFCC1Q9HA90 598 aa13.38□□□□□ -0.27
VTI1BP3-201ENST00000550220 HMG20BQ9P0W2 317 aa13.38□□□□□ -0.27
VTI1BP3-201ENST00000550220 GNRH1P01148 92 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 BTDP43251 543 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 RGS3P49796 1198 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 MAP3K10Q02779 954 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 MECOMQ03112 1051 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 KIF22Q14807 665 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 ZSCAN29Q8IWY8 852 aaPredicted RBP13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 ZNF512BQ96KM6 892 aaPredicted RBP13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 PICK1Q9NRD5 415 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 LRP2BPQ9P2M1 347 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 TNNQ9UQP3 1299 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 NOP58Q9Y2X3 529 aaKnown RBP13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 MROH7-TTC4A0A0A0MT08 1334 aa13.37□□□□□ -0.27
VTI1BP3-201ENST00000550220 CXCL11O14625 94 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 TLR2O60603 784 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 BAG3O95817 575 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 INPP5BP32019 993 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 SOX10P56693 466 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms