RNA–Protein interactions for RNA: ENST00000549400.1

PTPRB-207, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 4

Gene PTPRB, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-207ENST00000549400 SVIPQ8NHG7 77 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 ENOX1Q8TC92 643 aaKnown RBP4.62□□□□□ -1.67
PTPRB-207ENST00000549400 WHAMMQ8TF30 809 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 CHMP4CQ96CF2 233 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 ITPKCQ96DU7 683 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 TRIM34Q9BYJ4 488 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 VRTNQ9H8Y1 702 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 MBIPQ9NS73 344 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 PUF60Q9UHX1 559 aaKnown RBP4.62□□□□□ -1.67
PTPRB-207ENST00000549400 DNMT3LQ9UJW3 386 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 TMA7Q9Y2S6 64 aaKnown RBP4.62□□□□□ -1.67
PTPRB-207ENST00000549400 ZNF330Q9Y3S2 320 aaPredicted RBP4.62□□□□□ -1.67
PTPRB-207ENST00000549400 LTN1O94822 1766 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 KDM3BQ7LBC6 1761 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 MSH6P52701 1360 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 CACNA1FO60840 1977 aa4.62□□□□□ -1.67
PTPRB-207ENST00000549400 ZBTB7BO15156 539 aaPredicted RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 FGAP02671 866 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 TPM3P06753 285 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 FAM163BP0C2L3 166 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 SETSIPP0DME0 302 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 VDRP11473 427 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 FBLN1P23142 703 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 PEX19P40855 299 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 HDLBPQ00341 1268 aaKnown RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 GABPB1Q06547 395 aaPredicted RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 ZC3H12AQ5D1E8 599 aaKnown RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 INTS3Q68E01 1043 aaKnown RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 EP400NLQ6ZTU2 488 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 ZNF771Q7L3S4 317 aaPredicted RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 ANKLE2Q86XL3 938 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 NT5DC4Q86YG4 428 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 PARP9Q8IXQ6 854 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 LINC00528Q8N1L1 170 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 TMEM57Q8N5G2 664 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 LSM14AQ8ND56 463 aaKnown RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 C1orf131Q8NDD1 294 aaKnown RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 ZCRB1Q8TBF4 217 aaKnown RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 IL17RAQ96F46 866 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 CALR3Q96L12 384 aaKnown RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 MUC3BQ9H195 1237 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 NUCKS1Q9H1E3 243 aaKnown RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 FAM217BQ9NTX9 383 aaPredicted RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 SCINQ9Y6U3 715 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 PTPRCP08575 1304 aa4.61□□□□□ -1.67
PTPRB-207ENST00000549400 SOS2Q07890 1332 aaPredicted RBP4.61□□□□□ -1.67
PTPRB-207ENST00000549400 SIPA1L3O60292 1781 aaPredicted RBP4.6□□□□□ -1.67
PTPRB-207ENST00000549400 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.6□□□□□ -1.67
PTPRB-207ENST00000549400 SPDYE5A6NIY4 337 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 FIGNL2A6NMB9 653 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 SPTLC1O15269 473 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 ARHGEF15O94989 841 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 HMOX1P09601 288 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 COL6A1P12109 1028 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 GUCY2CP25092 1073 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 HOXC9P31274 260 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 CD151P48509 253 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 MRE11P49959 708 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 NUCB1Q02818 461 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 PTSQ03393 145 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 NR5A1Q13285 461 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 AMHR2Q16671 573 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 CCDC144BQ3MJ40 725 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 RNFT1Q5M7Z0 435 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 TTC30BQ8N4P2 665 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 TSPYL6Q8N831 410 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 JMYQ8N9B5 988 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 PROCA1Q8NCQ7 364 aaPredicted RBP4.6□□□□□ -1.67
PTPRB-207ENST00000549400 GAS2L2Q8NHY3 880 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 ERCC4Q92889 916 aaPredicted RBP4.6□□□□□ -1.67
PTPRB-207ENST00000549400 CEP63Q96MT8 703 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 API5Q9BZZ5 524 aaKnown RBP4.6□□□□□ -1.67
PTPRB-207ENST00000549400 RWDD1Q9H446 243 aaPredicted RBP4.6□□□□□ -1.67
PTPRB-207ENST00000549400 ABCF2Q9UG63 623 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 KLF15Q9UIH9 416 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 NOB1Q9ULX3 412 aaKnown RBP4.6□□□□□ -1.67
PTPRB-207ENST00000549400 PAXBP1Q9Y5B6 917 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 HEG1Q9ULI3 1381 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 MRC1P22897 1456 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 C1orf167Q5SNV9 1468 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 PARP4Q9UKK3 1724 aaKnown RBP4.6□□□□□ -1.67
PTPRB-207ENST00000549400 COL18A1P39060 1754 aa4.6□□□□□ -1.67
PTPRB-207ENST00000549400 CCDC196A0A1B0GTZ2 297 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 CDC14CA4D256 554 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 STRCP1A6NGW2 1772 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 HOXB7P09629 217 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 GLI3P10071 1580 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 CTHP32929 405 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 MAP3K10Q02779 954 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 RAD51AP2Q09MP3 1159 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 BIRC2Q13490 618 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 AGERQ15109 404 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 TWISTNBQ3B726 338 aaPredicted RBP4.59□□□□□ -1.67
PTPRB-207ENST00000549400 C11orf91Q3C1V1 193 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 TBC1D10BQ4KMP7 808 aaPredicted RBP4.59□□□□□ -1.67
PTPRB-207ENST00000549400 HSP90B2PQ58FF3 399 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 DESI1Q6ICB0 168 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 SULT6B1Q6IMI4 303 aa4.59□□□□□ -1.67
PTPRB-207ENST00000549400 SKAP1Q86WV1 359 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms