RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 WRNIP1Q96S55 665 aa21.62■■□□□ 1.05
CHMP1A-205ENST00000548650 RFX7Q2KHR2 1363 aa21.61■■□□□ 1.05
CHMP1A-205ENST00000548650 RBBP6Q7Z6E9 1792 aaKnown RBP21.61■■□□□ 1.05
CHMP1A-205ENST00000548650 SRGAP3O43295 1099 aa21.61■■□□□ 1.05
CHMP1A-205ENST00000548650 CCDC102BQ68D86 513 aa21.61■■□□□ 1.05
CHMP1A-205ENST00000548650 DENND2AQ9ULE3 1009 aa21.61■■□□□ 1.05
CHMP1A-205ENST00000548650 PDS5AQ29RF7 1337 aaKnown RBP21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 CCL15-CCL14A0A0B4J2E2 113 aa21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 BCAR3O75815 825 aa21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 LDHBP07195 334 aaKnown RBP21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 NFIAQ12857 509 aa21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 RASGRF1Q13972 1273 aa21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 CCL15Q16663 113 aa21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 CDC42EP5Q6NZY7 148 aa21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 ATF7IPQ6VMQ6 1270 aa21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 OTOP1Q7RTM1 612 aa21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 HOOK2Q96ED9 719 aa21.6■■□□□ 1.05
CHMP1A-205ENST00000548650 IPO8O15397 1037 aaKnown RBP21.59■■□□□ 1.05
CHMP1A-205ENST00000548650 GTF2A2P52657 109 aa21.59■■□□□ 1.05
CHMP1A-205ENST00000548650 DCAF15Q66K64 600 aa21.59■■□□□ 1.05
CHMP1A-205ENST00000548650 FAM151AQ8WW52 585 aa21.59■■□□□ 1.05
CHMP1A-205ENST00000548650 ZKSCAN4Q969J2 545 aaPredicted RBP21.59■■□□□ 1.05
CHMP1A-205ENST00000548650 TRIM17Q9Y577 477 aa21.59■■□□□ 1.05
CHMP1A-205ENST00000548650 ZSWIM8A7E2V4 1837 aa21.59■■□□□ 1.05
CHMP1A-205ENST00000548650 TFCP2Q12800 502 aa21.58■■□□□ 1.05
CHMP1A-205ENST00000548650 ERO1BQ86YB8 467 aa21.58■■□□□ 1.05
CHMP1A-205ENST00000548650 CD99L2Q8TCZ2 262 aa21.58■■□□□ 1.05
CHMP1A-205ENST00000548650 FRAT1Q92837 279 aaPredicted RBP21.58■■□□□ 1.05
CHMP1A-205ENST00000548650 ERO1AQ96HE7 468 aa21.58■■□□□ 1.05
CHMP1A-205ENST00000548650 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.58■■□□□ 1.05
CHMP1A-205ENST00000548650 GAKO14976 1311 aa21.57■■□□□ 1.04
CHMP1A-205ENST00000548650 A0A1B0GUL7 405 aa21.57■■□□□ 1.04
CHMP1A-205ENST00000548650 CAP1Q01518 475 aa21.57■■□□□ 1.04
CHMP1A-205ENST00000548650 TCP10Q12799 353 aa21.57■■□□□ 1.04
CHMP1A-205ENST00000548650 FAM43AQ8N2R8 423 aa21.57■■□□□ 1.04
CHMP1A-205ENST00000548650 ZNF341Q9BYN7 854 aa21.57■■□□□ 1.04
CHMP1A-205ENST00000548650 FAM198AQ9UFP1 575 aa21.57■■□□□ 1.04
CHMP1A-205ENST00000548650 ATRNL1Q5VV63 1379 aa21.57■■□□□ 1.04
CHMP1A-205ENST00000548650 TIMM10P62072 90 aa21.56■■□□□ 1.04
CHMP1A-205ENST00000548650 PPIL2Q13356 520 aa21.56■■□□□ 1.04
CHMP1A-205ENST00000548650 TAF1CQ15572 869 aaPredicted RBP21.56■■□□□ 1.04
CHMP1A-205ENST00000548650 ZGPATQ8N5A5 531 aaKnown RBP21.56■■□□□ 1.04
CHMP1A-205ENST00000548650 CLUAP1Q96AJ1 413 aa21.56■■□□□ 1.04
CHMP1A-205ENST00000548650 XAGE2Q96GT9 111 aa21.56■■□□□ 1.04
CHMP1A-205ENST00000548650 MAST2Q6P0Q8 1798 aa21.56■■□□□ 1.04
CHMP1A-205ENST00000548650 IRF6O14896 467 aa21.55■■□□□ 1.04
CHMP1A-205ENST00000548650 GNAI2P04899 355 aa21.55■■□□□ 1.04
CHMP1A-205ENST00000548650 INPP5BP32019 993 aa21.55■■□□□ 1.04
CHMP1A-205ENST00000548650 SP3Q02447 781 aa21.55■■□□□ 1.04
CHMP1A-205ENST00000548650 MIGA2Q7L4E1 593 aa21.55■■□□□ 1.04
CHMP1A-205ENST00000548650 USP40Q9NVE5 1235 aa21.55■■□□□ 1.04
CHMP1A-205ENST00000548650 AKAP2Q9Y2D5 859 aa21.55■■□□□ 1.04
CHMP1A-205ENST00000548650 DOCK1Q14185 1865 aa21.54■■□□□ 1.04
CHMP1A-205ENST00000548650 PNMA6EA0A0J9YXQ4 647 aa21.54■■□□□ 1.04
CHMP1A-205ENST00000548650 CETPP11597 493 aa21.54■■□□□ 1.04
CHMP1A-205ENST00000548650 MVPQ14764 893 aaKnown RBP21.54■■□□□ 1.04
CHMP1A-205ENST00000548650 ZNF112Q9UJU3 913 aa21.54■■□□□ 1.04
CHMP1A-205ENST00000548650 PTPRFP10586 1907 aa21.53■■□□□ 1.04
CHMP1A-205ENST00000548650 SNAPC2Q13487 334 aa21.53■■□□□ 1.04
CHMP1A-205ENST00000548650 DZIP1Q86YF9 867 aaKnown RBP21.53■■□□□ 1.04
CHMP1A-205ENST00000548650 TMEM57Q8N5G2 664 aa21.53■■□□□ 1.04
CHMP1A-205ENST00000548650 ZFYVE28Q9HCC9 887 aa21.53■■□□□ 1.04
CHMP1A-205ENST00000548650 PTPN22Q9Y2R2 807 aa21.53■■□□□ 1.04
CHMP1A-205ENST00000548650 BTBD19C9JJ37 291 aa21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 RGS3P49796 1198 aa21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 HNRNPUQ00839 825 aaKnown RBP eCLIP21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 PPATQ06203 517 aa21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 ZKSCAN2Q63HK3 967 aa21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 ZFPM1Q8IX07 1006 aa21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 IDI2Q9BXS1 227 aa21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 EFCC1Q9HA90 598 aa21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 ZCCHC17Q9NP64 241 aaKnown RBP21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 ABCF2Q9UG63 623 aa21.52■■□□□ 1.04
CHMP1A-205ENST00000548650 PHIPQ8WWQ0 1821 aa21.51■■□□□ 1.03
CHMP1A-205ENST00000548650 NOL9Q5SY16 702 aaKnown RBP21.51■■□□□ 1.03
CHMP1A-205ENST00000548650 ZNF384Q8TF68 577 aa21.51■■□□□ 1.03
CHMP1A-205ENST00000548650 MROH7-TTC4A0A0A0MT08 1334 aa21.51■■□□□ 1.03
CHMP1A-205ENST00000548650 KIAA0100Q14667 2235 aaKnown RBP21.51■■□□□ 1.03
CHMP1A-205ENST00000548650 ENTPD3O75355 529 aa21.5■■□□□ 1.03
CHMP1A-205ENST00000548650 WDHD1O75717 1129 aaPredicted RBP21.5■■□□□ 1.03
CHMP1A-205ENST00000548650 PI16Q6UXB8 463 aa21.5■■□□□ 1.03
CHMP1A-205ENST00000548650 MIER1Q8N108 512 aa21.5■■□□□ 1.03
CHMP1A-205ENST00000548650 FAM163AQ96GL9 167 aaPredicted RBP21.5■■□□□ 1.03
CHMP1A-205ENST00000548650 HMG20BQ9P0W2 317 aa21.5■■□□□ 1.03
CHMP1A-205ENST00000548650 KCNH4Q9UQ05 1017 aa21.5■■□□□ 1.03
CHMP1A-205ENST00000548650 CENPFP49454 3210 aa21.5■■□□□ 1.03
CHMP1A-205ENST00000548650 ARID4AP29374 1257 aaPredicted RBP21.49■■□□□ 1.03
CHMP1A-205ENST00000548650 BTDP43251 543 aa21.49■■□□□ 1.03
CHMP1A-205ENST00000548650 SPTY2D1Q68D10 685 aaPredicted RBP21.49■■□□□ 1.03
CHMP1A-205ENST00000548650 SH3BP5LQ7L8J4 393 aa21.49■■□□□ 1.03
CHMP1A-205ENST00000548650 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.49■■□□□ 1.03
CHMP1A-205ENST00000548650 NEUROD6Q96NK8 337 aa21.49■■□□□ 1.03
CHMP1A-205ENST00000548650 CDK5RAP2Q96SN8 1893 aa21.48■■□□□ 1.03
CHMP1A-205ENST00000548650 TLR2O60603 784 aa21.48■■□□□ 1.03
CHMP1A-205ENST00000548650 MECOMQ03112 1051 aa21.48■■□□□ 1.03
CHMP1A-205ENST00000548650 SLF2Q8IX21 1173 aa21.48■■□□□ 1.03
CHMP1A-205ENST00000548650 SPATA5Q8NB90 893 aa21.48■■□□□ 1.03
CHMP1A-205ENST00000548650 ARMC5Q96C12 935 aa21.48■■□□□ 1.03
CHMP1A-205ENST00000548650 DDX4Q9NQI0 724 aaKnown RBP21.48■■□□□ 1.03
CHMP1A-205ENST00000548650 MYO5AQ9Y4I1 1855 aaKnown RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms