RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 UBE3CQ15386 1083 aa17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 ANGEL2Q5VTE6 544 aaKnown RBP17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 ADGRA1Q86SQ6 560 aa17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 ZC3H15Q8WU90 426 aaKnown RBP17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 DCPSQ96C86 337 aaKnown RBP17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 VEZTQ9HBM0 779 aa17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 AATFQ9NY61 560 aaKnown RBP eCLIP17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 GGA3Q9NZ52 723 aa17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 ASTN2O75129 1339 aaPredicted RBP17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 POLR2AP24928 1970 aaKnown RBP17.49■□□□□ 0.39
TNFRSF1A-216ENST00000543995 GPR75-ASB3A0A0A6YYF3 556 aa17.48■□□□□ 0.39
TNFRSF1A-216ENST00000543995 RNF113AO15541 343 aaKnown RBP17.48■□□□□ 0.39
TNFRSF1A-216ENST00000543995 ZFYP08048 801 aaPredicted RBP17.48■□□□□ 0.39
TNFRSF1A-216ENST00000543995 SLFNL1Q499Z3 407 aa17.48■□□□□ 0.39
TNFRSF1A-216ENST00000543995 MIGA1Q8NAN2 632 aa17.48■□□□□ 0.39
TNFRSF1A-216ENST00000543995 USP40Q9NVE5 1235 aa17.48■□□□□ 0.39
TNFRSF1A-216ENST00000543995 TMOD2Q9NZR1 351 aa17.48■□□□□ 0.39
TNFRSF1A-216ENST00000543995 TCRBV5S4A2TA0A5A2 114 aa17.47■□□□□ 0.39
TNFRSF1A-216ENST00000543995 CHGBP05060 677 aa17.47■□□□□ 0.39
TNFRSF1A-216ENST00000543995 SDSP20132 328 aa17.47■□□□□ 0.39
TNFRSF1A-216ENST00000543995 CDC42EP5Q6NZY7 148 aa17.47■□□□□ 0.39
TNFRSF1A-216ENST00000543995 ZNF70Q9UC06 446 aaPredicted RBP17.47■□□□□ 0.39
TNFRSF1A-216ENST00000543995 MAGEB6P1A0A0J9YX57 407 aa17.47■□□□□ 0.39
TNFRSF1A-216ENST00000543995 SPDYE2Q495Y8 402 aa17.47■□□□□ 0.39
TNFRSF1A-216ENST00000543995 TOMM70O94826 608 aa17.46■□□□□ 0.39
TNFRSF1A-216ENST00000543995 PLCG2P16885 1265 aa17.46■□□□□ 0.39
TNFRSF1A-216ENST00000543995 CACNB3P54284 484 aa17.46■□□□□ 0.39
TNFRSF1A-216ENST00000543995 MAP1SQ66K74 1059 aaPredicted RBP17.46■□□□□ 0.39
TNFRSF1A-216ENST00000543995 CHADLQ6NUI6 762 aa17.46■□□□□ 0.39
TNFRSF1A-216ENST00000543995 APOBEC3FQ8IUX4 373 aaKnown RBP17.46■□□□□ 0.39
TNFRSF1A-216ENST00000543995 SULF1Q8IWU6 871 aa17.46■□□□□ 0.39
TNFRSF1A-216ENST00000543995 APPBP2Q92624 585 aa17.46■□□□□ 0.39
TNFRSF1A-216ENST00000543995 SCAF8Q9UPN6 1271 aaKnown RBP17.46■□□□□ 0.39
TNFRSF1A-216ENST00000543995 PITPNM2Q9BZ72 1349 aa17.45■□□□□ 0.38
TNFRSF1A-216ENST00000543995 TCP10L2B9ZVM9 353 aa17.45■□□□□ 0.38
TNFRSF1A-216ENST00000543995 DYNLL1P63167 89 aaKnown RBP17.45■□□□□ 0.38
TNFRSF1A-216ENST00000543995 TNFAIP1Q13829 316 aa17.45■□□□□ 0.38
TNFRSF1A-216ENST00000543995 CERS3Q8IU89 383 aa17.45■□□□□ 0.38
TNFRSF1A-216ENST00000543995 PGAP2Q9UHJ9 254 aa17.45■□□□□ 0.38
TNFRSF1A-216ENST00000543995 RFX7Q2KHR2 1363 aa17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 PPP4CP60510 307 aa17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 BMP2KLQ5H9B9 411 aa17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 CDC37L1Q7L3B6 337 aa17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 KRT26Q7Z3Y9 468 aa17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 TICAM2Q86XR7 235 aa17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 SMC1BQ8NDV3 1235 aa17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 SH3RF3Q8TEJ3 882 aaPredicted RBP17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 AIDAQ96BJ3 306 aa17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 PUS7LQ9H0K6 701 aaKnown RBP17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 DIAPH3Q9NSV4 1193 aa17.44■□□□□ 0.38
TNFRSF1A-216ENST00000543995 HIP1O00291 1037 aa17.43■□□□□ 0.38
TNFRSF1A-216ENST00000543995 MBD4O95243 580 aa17.43■□□□□ 0.38
TNFRSF1A-216ENST00000543995 TNNI2P48788 182 aa17.43■□□□□ 0.38
TNFRSF1A-216ENST00000543995 RHBDL3P58872 404 aa17.43■□□□□ 0.38
TNFRSF1A-216ENST00000543995 TEX11Q8IYF3 940 aa17.43■□□□□ 0.38
TNFRSF1A-216ENST00000543995 RBM46Q8TBY0 533 aaKnown RBP17.43■□□□□ 0.38
TNFRSF1A-216ENST00000543995 GLIS2Q9BZE0 524 aaPredicted RBP17.43■□□□□ 0.38
TNFRSF1A-216ENST00000543995 ARMT1Q9H993 441 aa17.43■□□□□ 0.38
TNFRSF1A-216ENST00000543995 CDK5RAP2Q96SN8 1893 aa17.43■□□□□ 0.38
TNFRSF1A-216ENST00000543995 ADM5C9JUS6 153 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 TCP10Q12799 353 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 PICALMQ13492 652 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 ZMYM1Q5SVZ6 1142 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 USP48Q86UV5 1035 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 LCORLQ8N3X6 602 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 OSBP2Q969R2 916 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 RIOK1Q9BRS2 568 aaKnown RBP17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 M0R2C6 588 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 NFIAQ12857 509 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 NMIQ13287 307 aaPredicted RBP17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 FKBP1CQ5VVH2 108 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 FAM227BQ96M60 508 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 CRNKL1Q9BZJ0 848 aaKnown RBP17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 DEFB129Q9H1M3 183 aa17.42■□□□□ 0.38
TNFRSF1A-216ENST00000543995 USP5P45974 858 aa17.41■□□□□ 0.38
TNFRSF1A-216ENST00000543995 RASA3Q14644 834 aa17.41■□□□□ 0.38
TNFRSF1A-216ENST00000543995 CWC27Q6UX04 472 aaKnown RBP17.41■□□□□ 0.38
TNFRSF1A-216ENST00000543995 TGFBRAP1Q8WUH2 860 aa17.41■□□□□ 0.38
TNFRSF1A-216ENST00000543995 SEC62Q99442 399 aaKnown RBP17.41■□□□□ 0.38
TNFRSF1A-216ENST00000543995 IDI2Q9BXS1 227 aa17.41■□□□□ 0.38
TNFRSF1A-216ENST00000543995 HELLSQ9NRZ9 838 aa17.41■□□□□ 0.38
TNFRSF1A-216ENST00000543995 FOCADQ5VW36 1801 aa17.41■□□□□ 0.38
TNFRSF1A-216ENST00000543995 A0A0D9SFI3 127 aa17.4■□□□□ 0.38
TNFRSF1A-216ENST00000543995 GPAA1O43292 621 aa17.4■□□□□ 0.38
TNFRSF1A-216ENST00000543995 WDHD1O75717 1129 aaPredicted RBP17.4■□□□□ 0.38
TNFRSF1A-216ENST00000543995 FAM83AQ86UY5 434 aa17.4■□□□□ 0.38
TNFRSF1A-216ENST00000543995 PPP2R3BQ9Y5P8 575 aa17.4■□□□□ 0.38
TNFRSF1A-216ENST00000543995 MCMDC2Q4G0Z9 681 aa17.39■□□□□ 0.37
TNFRSF1A-216ENST00000543995 PRAMEF18Q5VWM3 479 aa17.39■□□□□ 0.37
TNFRSF1A-216ENST00000543995 MAPKAPK5Q8IW41 473 aa17.39■□□□□ 0.37
TNFRSF1A-216ENST00000543995 ZSCAN29Q8IWY8 852 aaPredicted RBP17.39■□□□□ 0.37
TNFRSF1A-216ENST00000543995 DDX4Q9NQI0 724 aaKnown RBP17.39■□□□□ 0.37
TNFRSF1A-216ENST00000543995 FAM198AQ9UFP1 575 aa17.39■□□□□ 0.37
TNFRSF1A-216ENST00000543995 SLC4A4Q9Y6R1 1079 aa17.39■□□□□ 0.37
TNFRSF1A-216ENST00000543995 TRAF5O00463 557 aa17.38■□□□□ 0.37
TNFRSF1A-216ENST00000543995 ENTPD3O75355 529 aa17.38■□□□□ 0.37
TNFRSF1A-216ENST00000543995 CHMLP26374 656 aa17.38■□□□□ 0.37
TNFRSF1A-216ENST00000543995 FSTL1Q12841 308 aa17.38■□□□□ 0.37
TNFRSF1A-216ENST00000543995 DLK2Q6UY11 383 aa17.38■□□□□ 0.37
TNFRSF1A-216ENST00000543995 CCDC129Q6ZRS4 1044 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms