RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 IGDCC4Q8TDY8 1250 aa19.09■□□□□ 0.65
COL4A1-204ENST00000543140 NYXQ9GZU5 481 aa19.09■□□□□ 0.65
COL4A1-204ENST00000543140 COL1A1P02452 1464 aaPredicted RBP19.09■□□□□ 0.65
COL4A1-204ENST00000543140 METAP2P50579 478 aaKnown RBP eCLIP19.09■□□□□ 0.65
COL4A1-204ENST00000543140 APOA5Q6Q788 366 aa19.09■□□□□ 0.65
COL4A1-204ENST00000543140 SDR42E1Q8WUS8 393 aa19.09■□□□□ 0.65
COL4A1-204ENST00000543140 FAM84BQ96KN1 310 aaPredicted RBP19.09■□□□□ 0.65
COL4A1-204ENST00000543140 NACAP1Q9BZK3 213 aa19.09■□□□□ 0.65
COL4A1-204ENST00000543140 NPHP1O15259 732 aa19.08■□□□□ 0.65
COL4A1-204ENST00000543140 POLR3DP05423 398 aaPredicted RBP19.08■□□□□ 0.65
COL4A1-204ENST00000543140 AKNAD1Q5T1N1 836 aa19.08■□□□□ 0.65
COL4A1-204ENST00000543140 MFSD6Q6ZSS7 791 aa19.08■□□□□ 0.65
COL4A1-204ENST00000543140 ZSCAN30Q86W11 494 aa19.08■□□□□ 0.65
COL4A1-204ENST00000543140 CCDC192P0DO97 292 aa19.08■□□□□ 0.64
COL4A1-204ENST00000543140 TPTE2Q6XPS3 522 aa19.08■□□□□ 0.64
COL4A1-204ENST00000543140 ZNF396Q96N95 335 aaPredicted RBP19.08■□□□□ 0.64
COL4A1-204ENST00000543140 AIFM3Q96NN9 605 aa19.08■□□□□ 0.64
COL4A1-204ENST00000543140 ZKSCAN3Q9BRR0 538 aa19.08■□□□□ 0.64
COL4A1-204ENST00000543140 LY9Q9HBG7 655 aa19.08■□□□□ 0.64
COL4A1-204ENST00000543140 RCOR1Q9UKL0 485 aa19.08■□□□□ 0.64
COL4A1-204ENST00000543140 PNPLA7Q6ZV29 1317 aa19.08■□□□□ 0.64
COL4A1-204ENST00000543140 C4AP0C0L4 1744 aa19.08■□□□□ 0.64
COL4A1-204ENST00000543140 C4BP0C0L5 1744 aa19.08■□□□□ 0.64
COL4A1-204ENST00000543140 IFIT3O14879 490 aaKnown RBP19.07■□□□□ 0.64
COL4A1-204ENST00000543140 CDC27P30260 824 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 FBXO18Q8NFZ0 1043 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 PHKBQ93100 1093 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 TMEM87BQ96K49 555 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 GJD4Q96KN9 370 aaPredicted RBP19.07■□□□□ 0.64
COL4A1-204ENST00000543140 ZMYM6O95789 1325 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 SPATA31A6Q5VVP1 1343 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 NHSQ6T4R5 1651 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 THSD7AQ9UPZ6 1657 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 GNAT2P19087 354 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 PLCB2Q00722 1185 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 UVSSAQ2YD98 709 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 TFCP2L1Q9NZI6 479 aa19.07■□□□□ 0.64
COL4A1-204ENST00000543140 MPNDQ8N594 471 aa19.06■□□□□ 0.64
COL4A1-204ENST00000543140 DDX19AQ9NUU7 478 aaKnown RBP19.06■□□□□ 0.64
COL4A1-204ENST00000543140 MAGEB6P1A0A0J9YX57 407 aa19.06■□□□□ 0.64
COL4A1-204ENST00000543140 MINDY4BA8MYZ0 360 aa19.06■□□□□ 0.64
COL4A1-204ENST00000543140 SMIM22K7EJ46 135 aa19.06■□□□□ 0.64
COL4A1-204ENST00000543140 ZBTB43O43298 467 aa19.06■□□□□ 0.64
COL4A1-204ENST00000543140 CLSTN2Q9H4D0 955 aa19.06■□□□□ 0.64
COL4A1-204ENST00000543140 RFC4P35249 363 aa19.05■□□□□ 0.64
COL4A1-204ENST00000543140 ME1P48163 572 aa19.05■□□□□ 0.64
COL4A1-204ENST00000543140 CCAR1Q8IX12 1150 aaKnown RBP19.05■□□□□ 0.64
COL4A1-204ENST00000543140 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.05■□□□□ 0.64
COL4A1-204ENST00000543140 DYNLL1P63167 89 aaKnown RBP19.05■□□□□ 0.64
COL4A1-204ENST00000543140 TYRO3Q06418 890 aa19.05■□□□□ 0.64
COL4A1-204ENST00000543140 KRT23Q9C075 422 aa19.05■□□□□ 0.64
COL4A1-204ENST00000543140 CNNM2Q9H8M5 875 aa19.05■□□□□ 0.64
COL4A1-204ENST00000543140 TAF1LQ8IZX4 1826 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 EP400Q96L91 3159 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 MSNP26038 577 aaKnown RBP19.04■□□□□ 0.64
COL4A1-204ENST00000543140 SLC51AQ86UW1 340 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 SLC12A7Q9Y666 1083 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 GOLGA8AA7E2F4 631 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 KIF28PB7ZC32 967 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 RGL2O15211 777 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 PTMAP06454 111 aaKnown RBP19.04■□□□□ 0.64
COL4A1-204ENST00000543140 HS1BP3Q53T59 392 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 FAM196AQ6ZSG2 479 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 ZNF384Q8TF68 577 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 GOLPH3LQ9H4A5 285 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 JAG2Q9Y219 1238 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 MRVI1Q9Y6F6 885 aa19.04■□□□□ 0.64
COL4A1-204ENST00000543140 AFF2P51816 1311 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 CCDC69A6NI79 296 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 UBE2Q2LH0YL09 131 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 ADCY5O95622 1261 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 PPARAQ07869 468 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 TRAPPC3LQ5T215 181 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 SGMS1Q86VZ5 419 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 STAG1Q8WVM7 1258 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 ALG1Q9BT22 464 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 CLIC4Q9Y696 253 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 BAZ2AQ9UIF9 1905 aaKnown RBP19.03■□□□□ 0.64
COL4A1-204ENST00000543140 ATL3Q6DD88 541 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 FBXO33Q7Z6M2 555 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 FAM217BQ9NTX9 383 aaPredicted RBP19.03■□□□□ 0.64
COL4A1-204ENST00000543140 CACNA1SQ13698 1873 aa19.03■□□□□ 0.64
COL4A1-204ENST00000543140 COL24A1Q17RW2 1714 aa19.02■□□□□ 0.64
COL4A1-204ENST00000543140 CHAF1AQ13111 956 aaPredicted RBP19.02■□□□□ 0.64
COL4A1-204ENST00000543140 RIOK1Q9BRS2 568 aaKnown RBP19.02■□□□□ 0.64
COL4A1-204ENST00000543140 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.02■□□□□ 0.64
COL4A1-204ENST00000543140 NOL7Q9UMY1 257 aaKnown RBP19.02■□□□□ 0.64
COL4A1-204ENST00000543140 SBF2Q86WG5 1849 aa19.02■□□□□ 0.64
COL4A1-204ENST00000543140 CYP2D7A0A087X1C5 515 aa19.02■□□□□ 0.63
COL4A1-204ENST00000543140 CDKL5O76039 1030 aa19.02■□□□□ 0.63
COL4A1-204ENST00000543140 TM4SF1P30408 202 aa19.02■□□□□ 0.63
COL4A1-204ENST00000543140 LIFRP42702 1097 aa19.02■□□□□ 0.63
COL4A1-204ENST00000543140 CPLX2Q6PUV4 134 aaKnown RBP19.02■□□□□ 0.63
COL4A1-204ENST00000543140 TXNRD3Q86VQ6 643 aa19.02■□□□□ 0.63
COL4A1-204ENST00000543140 CCDC39Q9UFE4 941 aa19.02■□□□□ 0.63
COL4A1-204ENST00000543140 RANBP6O60518 1105 aaKnown RBP19.01■□□□□ 0.63
COL4A1-204ENST00000543140 HIBADHP31937 336 aaKnown RBP19.01■□□□□ 0.63
COL4A1-204ENST00000543140 IARSP41252 1262 aaKnown RBP19.01■□□□□ 0.63
COL4A1-204ENST00000543140 NTRK3Q16288 839 aa19.01■□□□□ 0.63
COL4A1-204ENST00000543140 ANO6Q4KMQ2 910 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms