RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	CYP4F12	Q9HCS2	524 aa		7.44	□□□□□ -1.22
PRKDC-210	ENST00000541488	PRRG2	O14669	202 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	FARP2	O94887	1054 aa	Predicted RBP	7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	MAP4	P27816	1152 aa	Known RBP	7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	MAPK8	P45983	427 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	FCGRT	P55899	365 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	EXOSC6	Q5RKV6	272 aa	Known RBP	7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	AGBL5	Q8NDL9	886 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	FLCN	Q8NFG4	579 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	SETDB2	Q96T68	719 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	TRIM56	Q9BRZ2	755 aa	Known RBP	7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	OSBPL1A	Q9BXW6	950 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	NLRP2	Q9NX02	1062 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	HIF3A	Q9Y2N7	669 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	CARMIL2	Q6F5E8	1435 aa		7.43	□□□□□ -1.22
PRKDC-210	ENST00000541488	TMEM238L	A0A1B0GVL6	79 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	MEGF11	A6BM72	1044 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	USP11	P51784	963 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	PLCB3	Q01970	1234 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	AKAP4	Q5JQC9	854 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	DTHD1	Q6ZMT9	781 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	GLIS3	Q8NEA6	775 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	FBLIM1	Q8WUP2	373 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	ALKBH8	Q96BT7	664 aa	Known RBP	7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	CORO1B	Q9BR76	489 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	NRSN2	Q9GZP1	204 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	PAK6	Q9NQU5	681 aa	Predicted RBP	7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	RAD18	Q9NS91	495 aa		7.42	□□□□□ -1.22
PRKDC-210	ENST00000541488	B3GALT4	O96024	378 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	CYP11A1	P05108	521 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	ITPKA	P23677	461 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	FAAP100	Q0VG06	881 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	PDE3A	Q14432	1141 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	NFKBIB	Q15653	356 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	CPSF6	Q16630	551 aa	Known RBP eCLIP	7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	KRTAP19-4	Q3LI73	84 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	CDPF1	Q6NVV7	123 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	LILRA6	Q6PI73	481 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	SMG8	Q8ND04	991 aa	Known RBP	7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	BSDC1	Q9NW68	430 aa	Predicted RBP	7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	AP4E1	Q9UPM8	1137 aa		7.41	□□□□□ -1.22
PRKDC-210	ENST00000541488	TIAF1	O95411	115 aa		7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	RAB6A	P20340	208 aa		7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	SOX4	Q06945	474 aa	Predicted RBP	7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	NXPE4	Q6UWF7	544 aa		7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	DYM	Q7RTS9	669 aa		7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	SHISA5	Q8N114	240 aa		7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	BCO2	Q9BYV7	579 aa		7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	GPN3	Q9UHW5	284 aa	Predicted RBP	7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	TRAK1	Q9UPV9	953 aa		7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	AKAP2	Q9Y2D5	859 aa		7.4	□□□□□ -1.22
PRKDC-210	ENST00000541488	TREH	O43280	583 aa		7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488	ADH5	P11766	374 aa		7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488	KCNA1	Q09470	495 aa		7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488	DSC3	Q14574	896 aa		7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488	PRPF40B	Q6NWY9	871 aa	Known RBP	7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488	KSR1	Q8IVT5	923 aa		7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488	C2CD4A	Q8NCU7	369 aa	Predicted RBP	7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488	SUGCT	Q9HAC7	445 aa		7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488	LGR6	Q9HBX8	967 aa		7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488	WWC3	Q9ULE0	1092 aa		7.39	□□□□□ -1.23
PRKDC-210	ENST00000541488		B8ZZF3	427 aa		7.38	□□□□□ -1.23
PRKDC-210	ENST00000541488	LIG1	P18858	919 aa		7.38	□□□□□ -1.23
PRKDC-210	ENST00000541488	AEBP1	Q8IUX7	1158 aa		7.38	□□□□□ -1.23
PRKDC-210	ENST00000541488	DDX54	Q8TDD1	881 aa	Known RBP	7.38	□□□□□ -1.23
PRKDC-210	ENST00000541488	ACTL7B	Q9Y614	415 aa		7.38	□□□□□ -1.23
PRKDC-210	ENST00000541488	FAM95C	A0A1B0GW59	222 aa		7.37	□□□□□ -1.23
PRKDC-210	ENST00000541488	BUD31	P41223	144 aa	Predicted RBP	7.37	□□□□□ -1.23
PRKDC-210	ENST00000541488	ENOX2	Q16206	610 aa	Known RBP	7.37	□□□□□ -1.23
PRKDC-210	ENST00000541488	WDR89	Q96FK6	387 aa	Predicted RBP	7.37	□□□□□ -1.23
PRKDC-210	ENST00000541488	KRTAP9-8	Q9BYQ0	159 aa		7.37	□□□□□ -1.23
PRKDC-210	ENST00000541488	CYP26A1	O43174	497 aa		7.36	□□□□□ -1.23
PRKDC-210	ENST00000541488	PTPN12	Q05209	780 aa	Known RBP	7.36	□□□□□ -1.23
PRKDC-210	ENST00000541488	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	7.36	□□□□□ -1.23
PRKDC-210	ENST00000541488	TRAIP	Q9BWF2	469 aa		7.36	□□□□□ -1.23
PRKDC-210	ENST00000541488	FAM105A	Q9NUU6	356 aa		7.36	□□□□□ -1.23
PRKDC-210	ENST00000541488	PPP4R2	Q9NY27	417 aa		7.36	□□□□□ -1.23
PRKDC-210	ENST00000541488	BIN1	O00499	593 aa		7.35	□□□□□ -1.23
PRKDC-210	ENST00000541488	AOC2	O75106	756 aa		7.35	□□□□□ -1.23
PRKDC-210	ENST00000541488	FBXO24	O75426	580 aa		7.35	□□□□□ -1.23
PRKDC-210	ENST00000541488	NFIC	P08651	508 aa		7.35	□□□□□ -1.23
PRKDC-210	ENST00000541488	PAOX	Q6QHF9	649 aa		7.35	□□□□□ -1.23
PRKDC-210	ENST00000541488	METTL22	Q9BUU2	404 aa	Predicted RBP	7.35	□□□□□ -1.23
PRKDC-210	ENST00000541488	WDR18	Q9BV38	432 aa		7.35	□□□□□ -1.23
PRKDC-210	ENST00000541488	CCDC86	Q9H6F5	360 aa	Known RBP	7.35	□□□□□ -1.23
PRKDC-210	ENST00000541488	PPP1R9A	Q9ULJ8	1098 aa		7.35	□□□□□ -1.23
PRKDC-210	ENST00000541488	ASPA	P45381	313 aa		7.34	□□□□□ -1.23
PRKDC-210	ENST00000541488	AP3B2	Q13367	1082 aa		7.34	□□□□□ -1.23
PRKDC-210	ENST00000541488	STK35	Q8TDR2	534 aa		7.34	□□□□□ -1.23
PRKDC-210	ENST00000541488	KCNB2	Q92953	911 aa		7.34	□□□□□ -1.23
PRKDC-210	ENST00000541488	TBC1D32	Q96NH3	1257 aa		7.34	□□□□□ -1.23
PRKDC-210	ENST00000541488	ASB16	Q96NS5	453 aa		7.34	□□□□□ -1.23
PRKDC-210	ENST00000541488	ADM	P35318	185 aa		7.33	□□□□□ -1.24
PRKDC-210	ENST00000541488	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	7.33	□□□□□ -1.24
PRKDC-210	ENST00000541488	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	7.33	□□□□□ -1.24
PRKDC-210	ENST00000541488	TPTE2	Q6XPS3	522 aa		7.33	□□□□□ -1.24
PRKDC-210	ENST00000541488	CILP2	Q8IUL8	1156 aa		7.33	□□□□□ -1.24
PRKDC-210	ENST00000541488	SLC38A3	Q99624	504 aa		7.33	□□□□□ -1.24
PRKDC-210	ENST00000541488	YIPF2	Q9BWQ6	316 aa		7.33	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms