RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 LRMPQ12912 555 aa20.08■□□□□ 0.8
SPIDR-227ENST00000541342 RESTQ13127 1097 aa20.08■□□□□ 0.8
SPIDR-227ENST00000541342 PLA2G4DQ86XP0 818 aa20.08■□□□□ 0.8
SPIDR-227ENST00000541342 GYS1P13807 737 aa20.07■□□□□ 0.8
SPIDR-227ENST00000541342 BRF1Q92994 677 aa20.07■□□□□ 0.8
SPIDR-227ENST00000541342 DDX19AQ9NUU7 478 aaKnown RBP20.07■□□□□ 0.8
SPIDR-227ENST00000541342 KLRK1P26718 216 aa20.07■□□□□ 0.8
SPIDR-227ENST00000541342 MAP3K12Q12852 859 aa20.07■□□□□ 0.8
SPIDR-227ENST00000541342 IMMTQ16891 758 aaKnown RBP20.07■□□□□ 0.8
SPIDR-227ENST00000541342 DDX11Q96FC9 970 aa20.07■□□□□ 0.8
SPIDR-227ENST00000541342 SLC51AQ86UW1 340 aa20.06■□□□□ 0.8
SPIDR-227ENST00000541342 GOLGA6L6A8MZA4 724 aa20.06■□□□□ 0.8
SPIDR-227ENST00000541342 NPHP1O15259 732 aa20.06■□□□□ 0.8
SPIDR-227ENST00000541342 CHST3Q7LGC8 479 aa20.06■□□□□ 0.8
SPIDR-227ENST00000541342 CCDC186Q7Z3E2 898 aa20.06■□□□□ 0.8
SPIDR-227ENST00000541342 TDRD7Q8NHU6 1098 aaKnown RBP20.06■□□□□ 0.8
SPIDR-227ENST00000541342 FAM84BQ96KN1 310 aaPredicted RBP20.06■□□□□ 0.8
SPIDR-227ENST00000541342 STRBPQ96SI9 672 aaKnown RBP20.06■□□□□ 0.8
SPIDR-227ENST00000541342 AGXT2Q9BYV1 514 aa20.06■□□□□ 0.8
SPIDR-227ENST00000541342 NBPF3Q9H094 633 aa20.06■□□□□ 0.8
SPIDR-227ENST00000541342 SMAP1Q8IYB5 467 aaPredicted RBP20.05■□□□□ 0.8
SPIDR-227ENST00000541342 CNBD1Q8NA66 436 aa20.05■□□□□ 0.8
SPIDR-227ENST00000541342 ZNF75DP51815 510 aa20.05■□□□□ 0.8
SPIDR-227ENST00000541342 RBM6P78332 1123 aaKnown RBP20.05■□□□□ 0.8
SPIDR-227ENST00000541342 TXNRD1Q16881 649 aa20.04■□□□□ 0.8
SPIDR-227ENST00000541342 PRR5LQ6MZQ0 368 aa20.04■□□□□ 0.8
SPIDR-227ENST00000541342 AIDAQ96BJ3 306 aa20.04■□□□□ 0.8
SPIDR-227ENST00000541342 DNAJC25Q9H1X3 360 aa20.04■□□□□ 0.8
SPIDR-227ENST00000541342 CTIFO43310 598 aaKnown RBP20.04■□□□□ 0.8
SPIDR-227ENST00000541342 MYH13Q9UKX3 1938 aa20.04■□□□□ 0.8
SPIDR-227ENST00000541342 GOLGA6L4A6NEF3 574 aa20.04■□□□□ 0.8
SPIDR-227ENST00000541342 MBD4O95243 580 aa20.03■□□□□ 0.8
SPIDR-227ENST00000541342 ADD1P35611 737 aaKnown RBP20.03■□□□□ 0.8
SPIDR-227ENST00000541342 APOBRQ0VD83 1088 aa20.03■□□□□ 0.8
SPIDR-227ENST00000541342 PRDM10Q9NQV6 1147 aa20.03■□□□□ 0.8
SPIDR-227ENST00000541342 ZNF213O14771 459 aa20.03■□□□□ 0.8
SPIDR-227ENST00000541342 SCRN1Q12765 414 aa20.03■□□□□ 0.8
SPIDR-227ENST00000541342 CACNA1SQ13698 1873 aa20.03■□□□□ 0.8
SPIDR-227ENST00000541342 CAVIN4Q5BKX8 364 aa20.02■□□□□ 0.8
SPIDR-227ENST00000541342 ZNF772Q68DY9 489 aaPredicted RBP20.02■□□□□ 0.8
SPIDR-227ENST00000541342 FBXO33Q7Z6M2 555 aa20.02■□□□□ 0.8
SPIDR-227ENST00000541342 ARMT1Q9H993 441 aa20.02■□□□□ 0.8
SPIDR-227ENST00000541342 ZNF165P49910 485 aa20.02■□□□□ 0.8
SPIDR-227ENST00000541342 FGD1P98174 961 aa20.02■□□□□ 0.8
SPIDR-227ENST00000541342 MB21D2Q8IYB1 491 aaPredicted RBP20.02■□□□□ 0.8
SPIDR-227ENST00000541342 NKX2-3Q8TAU0 364 aa20.02■□□□□ 0.8
SPIDR-227ENST00000541342 ANKRD7Q92527 254 aa20.02■□□□□ 0.8
SPIDR-227ENST00000541342 EPB41L4AQ9HCS5 686 aaPredicted RBP20.02■□□□□ 0.8
SPIDR-227ENST00000541342 LRP2BPQ9P2M1 347 aa20.02■□□□□ 0.8
SPIDR-227ENST00000541342 APPP05067 770 aa20.02■□□□□ 0.79
SPIDR-227ENST00000541342 BICD2Q8TD16 824 aa20.02■□□□□ 0.79
SPIDR-227ENST00000541342 GNL3LQ9NVN8 582 aaKnown RBP20.02■□□□□ 0.79
SPIDR-227ENST00000541342 DENND2AQ9ULE3 1009 aa20.02■□□□□ 0.79
SPIDR-227ENST00000541342 CCDC144BQ3MJ40 725 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 ADGRA1Q86SQ6 560 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 TBC1D10CQ8IV04 446 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 CCDC144CPQ8IYA2 1237 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 SMARCC2Q8TAQ2 1214 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 FTOQ9C0B1 505 aaKnown RBP eCLIP20.01■□□□□ 0.79
SPIDR-227ENST00000541342 ANKRD2Q9GZV1 360 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 GPHNQ9NQX3 736 aaPredicted RBP20.01■□□□□ 0.79
SPIDR-227ENST00000541342 TRIM5Q9C035 493 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 PPP4R3BQ5MIZ7 849 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 VPS37DQ86XT2 251 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 LCORLQ8N3X6 602 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 TFCP2L1Q9NZI6 479 aa20.01■□□□□ 0.79
SPIDR-227ENST00000541342 IRS2Q9Y4H2 1338 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 PFKFB2O60825 505 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 CTDNEP1O95476 244 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 ANTXR2P58335 489 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 GRAPQ13588 217 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 GRAPLQ8TC17 118 aaPredicted RBP20■□□□□ 0.79
SPIDR-227ENST00000541342 ABCF2Q9UG63 623 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 CHD4Q14839 1912 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 SERPINB2P05120 415 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 IQCB1Q15051 598 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20■□□□□ 0.79
SPIDR-227ENST00000541342 TXNRD3Q86VQ6 643 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 FBXL16Q8N461 479 aa20■□□□□ 0.79
SPIDR-227ENST00000541342 PATL2C9JE40 543 aaKnown RBP19.99■□□□□ 0.79
SPIDR-227ENST00000541342 PRKAB2O43741 272 aa19.99■□□□□ 0.79
SPIDR-227ENST00000541342 DDR1Q08345 913 aa19.99■□□□□ 0.79
SPIDR-227ENST00000541342 MIGA1Q8NAN2 632 aa19.99■□□□□ 0.79
SPIDR-227ENST00000541342 CACTINQ8WUQ7 758 aaKnown RBP19.99■□□□□ 0.79
SPIDR-227ENST00000541342 ZSCAN20P17040 1043 aaPredicted RBP19.99■□□□□ 0.79
SPIDR-227ENST00000541342 ALX1Q15699 326 aa19.99■□□□□ 0.79
SPIDR-227ENST00000541342 C11orf57Q6ZUT1 292 aaPredicted RBP19.99■□□□□ 0.79
SPIDR-227ENST00000541342 GSG1L2A8MUP6 293 aa19.99■□□□□ 0.79
SPIDR-227ENST00000541342 ZNF827Q17R98 1081 aa19.99■□□□□ 0.79
SPIDR-227ENST00000541342 IFNL3Q8IZI9 196 aa19.99■□□□□ 0.79
SPIDR-227ENST00000541342 NCOA7Q8NI08 942 aa19.99■□□□□ 0.79
SPIDR-227ENST00000541342 GOLPH3LQ9H4A5 285 aa19.99■□□□□ 0.79
SPIDR-227ENST00000541342 NSUN7Q8NE18 718 aaKnown RBP19.98■□□□□ 0.79
SPIDR-227ENST00000541342 C16orf45Q96MC5 204 aaPredicted RBP19.98■□□□□ 0.79
SPIDR-227ENST00000541342 ZMYM6O95789 1325 aa19.98■□□□□ 0.79
SPIDR-227ENST00000541342 PNPLA7Q6ZV29 1317 aa19.98■□□□□ 0.79
SPIDR-227ENST00000541342 PRC1O43663 620 aa19.98■□□□□ 0.79
SPIDR-227ENST00000541342 CEBPZQ03701 1054 aaKnown RBP19.98■□□□□ 0.79
SPIDR-227ENST00000541342 CHAF1AQ13111 956 aaPredicted RBP19.98■□□□□ 0.79
SPIDR-227ENST00000541342 ZNF384Q8TF68 577 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms