RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 SENP2Q9HC62 589 aa14.52□□□□□ -0.08
AP003559.1-201ENST00000540906 BRPF3Q9ULD4 1205 aa14.52□□□□□ -0.08
AP003559.1-201ENST00000540906 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.52□□□□□ -0.08
AP003559.1-201ENST00000540906 SALL1Q9NSC2 1324 aa14.52□□□□□ -0.08
AP003559.1-201ENST00000540906 SYT1P21579 422 aa14.52□□□□□ -0.09
AP003559.1-201ENST00000540906 TDO2P48775 406 aa14.52□□□□□ -0.09
AP003559.1-201ENST00000540906 DIXDC1Q155Q3 683 aa14.52□□□□□ -0.09
AP003559.1-201ENST00000540906 RAB11FIP4Q86YS3 637 aa14.52□□□□□ -0.09
AP003559.1-201ENST00000540906 NCOA7Q8NI08 942 aa14.52□□□□□ -0.09
AP003559.1-201ENST00000540906 NCOA5Q9HCD5 579 aaKnown RBP14.52□□□□□ -0.09
AP003559.1-201ENST00000540906 AATFQ9NY61 560 aaKnown RBP eCLIP14.52□□□□□ -0.09
AP003559.1-201ENST00000540906 PFKFB2O60825 505 aa14.51□□□□□ -0.09
AP003559.1-201ENST00000540906 CTDNEP1O95476 244 aa14.51□□□□□ -0.09
AP003559.1-201ENST00000540906 GNAT2P19087 354 aa14.51□□□□□ -0.09
AP003559.1-201ENST00000540906 CCT2P78371 535 aaKnown RBP14.51□□□□□ -0.09
AP003559.1-201ENST00000540906 PIAS4Q8N2W9 510 aaPredicted RBP14.51□□□□□ -0.09
AP003559.1-201ENST00000540906 ZNF219Q9P2Y4 722 aaPredicted RBP14.51□□□□□ -0.09
AP003559.1-201ENST00000540906 PPFIA3O75145 1194 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 PDIA3P30101 505 aaKnown RBP14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 FGD1P98174 961 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 TMC4Q7Z404 712 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 GBP4Q96PP9 640 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 LDHBP07195 334 aaKnown RBP14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 CYP2D6P10635 497 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 MCM5P33992 734 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 FOXD4L6Q3SYB3 417 aaPredicted RBP14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 MCTP1Q6DN14 999 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 FOXD4L3Q6VB84 417 aaPredicted RBP14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 RALYLQ86SE5 291 aaKnown RBP14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 MPNDQ8N594 471 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 WDR66Q8TBY9 1149 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 HPS5Q9UPZ3 1129 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 MTMR6Q9Y217 621 aa14.5□□□□□ -0.09
AP003559.1-201ENST00000540906 MYH2Q9UKX2 1941 aa14.49□□□□□ -0.09
AP003559.1-201ENST00000540906 STX6O43752 255 aa14.49□□□□□ -0.09
AP003559.1-201ENST00000540906 ALDH1B1P30837 517 aa14.49□□□□□ -0.09
AP003559.1-201ENST00000540906 PPARAQ07869 468 aa14.49□□□□□ -0.09
AP003559.1-201ENST00000540906 DZIP1Q86YF9 867 aaKnown RBP14.49□□□□□ -0.09
AP003559.1-201ENST00000540906 FBXL16Q8N461 479 aa14.49□□□□□ -0.09
AP003559.1-201ENST00000540906 MXD3Q9BW11 206 aa14.49□□□□□ -0.09
AP003559.1-201ENST00000540906 DDX11L8A8MPP1 907 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 MINDY4BA8MYZ0 360 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 SH2B2O14492 632 aaPredicted RBP14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 ZBTB7AO95365 584 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 EVCP57679 992 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 DOK7Q18PE1 504 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 AKNAD1Q5T1N1 836 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 STYK1Q6J9G0 422 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 NSUN7Q8NE18 718 aaKnown RBP14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 NACAP1Q9BZK3 213 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 NAP1L2Q9ULW6 460 aaPredicted RBP14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 CDK5RAP2Q96SN8 1893 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 LAMB1P07942 1786 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 ADAMTSL1Q8N6G6 1762 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 C10orf71Q711Q0 1435 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 SNED1Q8TER0 1413 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 KLF18A0A0U1RQI7 1052 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 TRAK2O60296 914 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 KDM4AO75164 1064 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 ZSCAN22P10073 491 aaPredicted RBP14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 RRP12Q5JTH9 1297 aaKnown RBP14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 CTR9Q6PD62 1173 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 DPP8Q6V1X1 898 aaPredicted RBP14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 SH3RF3Q8TEJ3 882 aaPredicted RBP14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 STAG1Q8WVM7 1258 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 DDX11Q96FC9 970 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 ZSWIM5Q9P217 1185 aa14.48□□□□□ -0.09
AP003559.1-201ENST00000540906 WDR33Q9C0J8 1336 aaKnown RBP14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 H0YIN7 160 aa14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 GTF2IP78347 998 aa14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 SPTY2D1Q68D10 685 aaPredicted RBP14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 CERS5Q8N5B7 392 aa14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 SMARCC2Q8TAQ2 1214 aa14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 IGDCC4Q8TDY8 1250 aa14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 C7orf43Q8WVR3 580 aa14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 RTFDC1Q9BY42 306 aaPredicted RBP14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 DCP1AQ9NPI6 582 aaPredicted RBP14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 KCNQ5Q9NR82 932 aa14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 LMBRD1Q9NUN5 540 aa14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 WDR19Q8NEZ3 1342 aa14.47□□□□□ -0.09
AP003559.1-201ENST00000540906 TCHHQ07283 1943 aa14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 ZNF646O15015 1829 aaPredicted RBP14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 SLC4A8Q2Y0W8 1093 aa14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 MFSD14BQ5SR56 506 aa14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 CDC37L1Q7L3B6 337 aa14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 ZNF274Q96GC6 653 aaPredicted RBP14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 ZKSCAN3Q9BRR0 538 aa14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 ANAPC4Q9UJX5 808 aa14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 FAM205AQ6ZU69 1335 aa14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 DLEC1Q9Y238 1755 aa14.46□□□□□ -0.09
AP003559.1-201ENST00000540906 SCN9AQ15858 1988 aa14.46□□□□□ -0.1
AP003559.1-201ENST00000540906 USP17L12C9JPN9 530 aa14.45□□□□□ -0.1
AP003559.1-201ENST00000540906 USP17L21D6R901 530 aa14.45□□□□□ -0.1
AP003559.1-201ENST00000540906 F13A1P00488 732 aa14.45□□□□□ -0.1
AP003559.1-201ENST00000540906 RXRAP19793 462 aa14.45□□□□□ -0.1
AP003559.1-201ENST00000540906 FOSBP53539 338 aa14.45□□□□□ -0.1
AP003559.1-201ENST00000540906 TRDNQ13061 729 aa14.45□□□□□ -0.1
AP003559.1-201ENST00000540906 MFSD6Q6ZSS7 791 aa14.45□□□□□ -0.1
AP003559.1-201ENST00000540906 LY9Q9HBG7 655 aa14.45□□□□□ -0.1
AP003559.1-201ENST00000540906 MKRN1Q9UHC7 482 aaKnown RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms