RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 APOA5Q6Q788 366 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 BICDL1Q6ZP65 573 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 ADGRA1Q86SQ6 560 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 MTA3Q9BTC8 594 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 CLSTN2Q9H4D0 955 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 RTCBQ9Y3I0 505 aaKnown RBP16.12■□□□□ 0.17
RTN3-210ENST00000540798 SEMA3EO15041 775 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 PRKAB2O43741 272 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 TM4SF1P30408 202 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 AKNAD1Q5T1N1 836 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 FBXO18Q8NFZ0 1043 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 ARHGEF1Q92888 912 aaKnown RBP16.12■□□□□ 0.17
RTN3-210ENST00000540798 ZNF396Q96N95 335 aaPredicted RBP16.12■□□□□ 0.17
RTN3-210ENST00000540798 LRP2BPQ9P2M1 347 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 DLEC1Q9Y238 1755 aa16.12■□□□□ 0.17
RTN3-210ENST00000540798 IRS2Q9Y4H2 1338 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 ZPR1O75312 459 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 DACT1Q9NYF0 836 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 SLC4A4Q9Y6R1 1079 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 ZSCAN30Q86W11 494 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 NLRP3Q96P20 1036 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 USP28Q96RU2 1077 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 NACAP1Q9BZK3 213 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 KRT23Q9C075 422 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 SENP2Q9HC62 589 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 ORC3Q9UBD5 711 aaPredicted RBP16.11■□□□□ 0.17
RTN3-210ENST00000540798 ANAPC4Q9UJX5 808 aa16.11■□□□□ 0.17
RTN3-210ENST00000540798 LAMB1P07942 1786 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 RPS8P62241 208 aaKnown RBP16.1■□□□□ 0.17
RTN3-210ENST00000540798 CTDSPL2Q05D32 466 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 MAP3K11Q16584 847 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 TPRNQ4KMQ1 711 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 CAVIN4Q5BKX8 364 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 NBPF5PQ86XG9 351 aaPredicted RBP16.1■□□□□ 0.17
RTN3-210ENST00000540798 RIOK1Q9BRS2 568 aaKnown RBP16.1■□□□□ 0.17
RTN3-210ENST00000540798 ZSWIM5Q9P217 1185 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 GOLGA6L4A6NEF3 574 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 NTRK3Q16288 839 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 C8orf76Q96K31 380 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 CCDC88AQ3V6T2 1871 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 NR1I2O75469 434 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 CYP7A1P22680 504 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 TPTE2Q6XPS3 522 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 INCENPQ9NQS7 918 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 FAM217BQ9NTX9 383 aaPredicted RBP16.1■□□□□ 0.17
RTN3-210ENST00000540798 RTEL1Q9NZ71 1219 aa16.1■□□□□ 0.17
RTN3-210ENST00000540798 DUOX1Q9NRD9 1551 aa16.09■□□□□ 0.17
RTN3-210ENST00000540798 CCDC192P0DO97 292 aa16.09■□□□□ 0.17
RTN3-210ENST00000540798 METAP2P50579 478 aaKnown RBP eCLIP16.09■□□□□ 0.17
RTN3-210ENST00000540798 FOSBP53539 338 aa16.09■□□□□ 0.17
RTN3-210ENST00000540798 ZNF384Q8TF68 577 aa16.09■□□□□ 0.17
RTN3-210ENST00000540798 ANKRD2Q9GZV1 360 aa16.09■□□□□ 0.17
RTN3-210ENST00000540798 PPFIA3O75145 1194 aa16.09■□□□□ 0.17
RTN3-210ENST00000540798 GTF2E1P29083 439 aaPredicted RBP16.09■□□□□ 0.17
RTN3-210ENST00000540798 GUCY1B3Q02153 619 aa16.09■□□□□ 0.17
RTN3-210ENST00000540798 FAM182BQ5T319 152 aa16.09■□□□□ 0.17
RTN3-210ENST00000540798 FTOQ9C0B1 505 aaKnown RBP eCLIP16.09■□□□□ 0.17
RTN3-210ENST00000540798 NOL7Q9UMY1 257 aaKnown RBP16.09■□□□□ 0.17
RTN3-210ENST00000540798 CPLX1O14810 134 aa16.08■□□□□ 0.17
RTN3-210ENST00000540798 CDKL5O76039 1030 aa16.08■□□□□ 0.17
RTN3-210ENST00000540798 CDC27P30260 824 aa16.08■□□□□ 0.17
RTN3-210ENST00000540798 BRAPQ7Z569 592 aa16.08■□□□□ 0.17
RTN3-210ENST00000540798 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.08■□□□□ 0.17
RTN3-210ENST00000540798 TMEM67Q5HYA8 995 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 MFSD6Q6ZSS7 791 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 RAB11FIP4Q86YS3 637 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 MIGA1Q8NAN2 632 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 TNMDQ9H2S6 317 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 IQSEC3Q9UPP2 1182 aaPredicted RBP16.08■□□□□ 0.16
RTN3-210ENST00000540798 BAZ2AQ9UIF9 1905 aaKnown RBP16.08■□□□□ 0.16
RTN3-210ENST00000540798 STK36Q9NRP7 1315 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 MAGEB6P1A0A0J9YX57 407 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 KDM4AO75164 1064 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 TDO2P48775 406 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 MRVI1Q9Y6F6 885 aa16.08■□□□□ 0.16
RTN3-210ENST00000540798 ZBTB43O43298 467 aa16.07■□□□□ 0.16
RTN3-210ENST00000540798 KLRK1P26718 216 aa16.07■□□□□ 0.16
RTN3-210ENST00000540798 RCAN1P53805 252 aa16.07■□□□□ 0.16
RTN3-210ENST00000540798 TMED8Q6PL24 325 aaPredicted RBP16.07■□□□□ 0.16
RTN3-210ENST00000540798 BICD2Q8TD16 824 aa16.07■□□□□ 0.16
RTN3-210ENST00000540798 KIF23Q02241 960 aaPredicted RBP16.07■□□□□ 0.16
RTN3-210ENST00000540798 PPARAQ07869 468 aa16.07■□□□□ 0.16
RTN3-210ENST00000540798 ENGASEQ8NFI3 743 aa16.07■□□□□ 0.16
RTN3-210ENST00000540798 POLR3EQ9NVU0 708 aa16.07■□□□□ 0.16
RTN3-210ENST00000540798 TYRO3Q06418 890 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 SNW1Q13573 536 aaKnown RBP16.06■□□□□ 0.16
RTN3-210ENST00000540798 OTUD7BQ6GQQ9 843 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 BRIP1Q9BX63 1249 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 GOLPH3LQ9H4A5 285 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 RNF41Q9H4P4 317 aaPredicted RBP16.06■□□□□ 0.16
RTN3-210ENST00000540798 RAI14Q9P0K7 980 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 CCDC39Q9UFE4 941 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 AFF2P51816 1311 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 KIF28PB7ZC32 967 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 CAMK4Q16566 473 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 ABCF2Q9UG63 623 aa16.06■□□□□ 0.16
RTN3-210ENST00000540798 RANBP6O60518 1105 aaKnown RBP16.05■□□□□ 0.16
RTN3-210ENST00000540798 FGRP09769 529 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 LINC00301Q8NCQ3 95 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 IFIT3O14879 490 aaKnown RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms