RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 TRDNQ13061 729 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 TCIRG1Q13488 830 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 CHRNA2Q15822 529 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 RESP18Q5W5W9 173 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 KRT40Q6A162 431 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 FCHSD1Q86WN1 690 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 RAB11FIP4Q86YS3 637 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 MAP3K14Q99558 947 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 PLA2G12BQ9BX93 195 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.16□□□□□ -0.62
CDH13-204ENST00000539548 NBPF3Q9H094 633 aa11.16□□□□□ -0.62
CDH13-204ENST00000539548 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.16□□□□□ -0.62
CDH13-204ENST00000539548 AKAP11Q9UKA4 1901 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 PAPPAQ13219 1627 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 CUTAO60888 179 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 CSF1RP07333 972 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 ISM2Q6H9L7 571 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 TRIM65Q6PJ69 517 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 CPLX2Q6PUV4 134 aaKnown RBP11.15□□□□□ -0.62
CDH13-204ENST00000539548 VPS37DQ86XT2 251 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 HOMER1Q86YM7 354 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 VSTM4Q8IW00 320 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 ELOA2Q8IYF1 753 aaPredicted RBP11.15□□□□□ -0.62
CDH13-204ENST00000539548 DPF2Q92785 391 aa11.15□□□□□ -0.62
CDH13-204ENST00000539548 SH2B2O14492 632 aaPredicted RBP11.14□□□□□ -0.63
CDH13-204ENST00000539548 SERPINC1P01008 464 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 METAP2P50579 478 aaKnown RBP eCLIP11.14□□□□□ -0.63
CDH13-204ENST00000539548 OLFM4Q6UX06 510 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 REXO1L1PQ8IX06 675 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 CABLES1Q8TDN4 633 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 ZNF512BQ96KM6 892 aaPredicted RBP11.14□□□□□ -0.63
CDH13-204ENST00000539548 AIFM3Q96NN9 605 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 SRRTQ9BXP5 876 aaKnown RBP11.14□□□□□ -0.63
CDH13-204ENST00000539548 PCDH11XQ9BZA7 1347 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 PCDH11YQ9BZA8 1340 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 ECM29Q5VYK3 1845 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 NPHP1O15259 732 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 PCCAP05165 728 aaPredicted RBP11.14□□□□□ -0.63
CDH13-204ENST00000539548 ADD2P35612 726 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 PNOCQ13519 176 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 NKX1-1Q15270 411 aaPredicted RBP11.14□□□□□ -0.63
CDH13-204ENST00000539548 CCDC102BQ68D86 513 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 CYB5R4Q7L1T6 521 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 CREBRFQ8IUR6 639 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 LRRN4CLQ8ND94 238 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 ZCRB1Q8TBF4 217 aaKnown RBP11.14□□□□□ -0.63
CDH13-204ENST00000539548 SYTL4Q96C24 671 aaPredicted RBP11.14□□□□□ -0.63
CDH13-204ENST00000539548 TMEM87BQ96K49 555 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 DNAI1Q9UI46 699 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 ATRNO75882 1429 aa11.14□□□□□ -0.63
CDH13-204ENST00000539548 ZSCAN12O43309 604 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 CLCN6P51797 869 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 IFIT5Q13325 482 aaKnown RBP11.13□□□□□ -0.63
CDH13-204ENST00000539548 NTRK3Q16288 839 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 CFAP100Q494V2 611 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 HSP90AB3PQ58FF7 597 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 APOA5Q6Q788 366 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 KRBA2Q6ZNG9 492 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 METTL16Q86W50 562 aaKnown RBP11.13□□□□□ -0.63
CDH13-204ENST00000539548 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.13□□□□□ -0.63
CDH13-204ENST00000539548 FHOD1Q9Y613 1164 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 TOP1P11387 765 aaKnown RBP11.13□□□□□ -0.63
CDH13-204ENST00000539548 CDC27P30260 824 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 MCAMP43121 646 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 MDM2Q00987 491 aaPredicted RBP11.13□□□□□ -0.63
CDH13-204ENST00000539548 GNL2Q13823 731 aaKnown RBP11.13□□□□□ -0.63
CDH13-204ENST00000539548 TTF1Q15361 905 aaPredicted RBP11.13□□□□□ -0.63
CDH13-204ENST00000539548 UBE3CQ15386 1083 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 LONRF3Q496Y0 759 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 ARHGAP29Q52LW3 1261 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 TAF7LQ5H9L4 462 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 PI16Q6UXB8 463 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 TBC1D10CQ8IV04 446 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 FOXP4Q8IVH2 680 aaPredicted RBP11.13□□□□□ -0.63
CDH13-204ENST00000539548 IGDCC4Q8TDY8 1250 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 DDX17Q92841 729 aaKnown RBP11.13□□□□□ -0.63
CDH13-204ENST00000539548 FANCLQ9NW38 375 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 RIPOR2Q9Y4F9 1068 aa11.13□□□□□ -0.63
CDH13-204ENST00000539548 ARHGAP6O43182 974 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 TPM1P09493 284 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 ATF3P18847 181 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 IARSP41252 1262 aaKnown RBP11.12□□□□□ -0.63
CDH13-204ENST00000539548 TBX2Q13207 712 aaPredicted RBP11.12□□□□□ -0.63
CDH13-204ENST00000539548 TRIM29Q14134 588 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 SGMS1Q86VZ5 419 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 TMEM139Q8IV31 216 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 NKX2-3Q8TAU0 364 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 UBXN4Q92575 508 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 CLIC6Q96NY7 704 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 UTP14AQ9BVJ6 771 aaKnown RBP11.12□□□□□ -0.63
CDH13-204ENST00000539548 KCNH3Q9ULD8 1083 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 PCDHA5Q9Y5H7 936 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 TNS2Q63HR2 1409 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 TNS3Q68CZ2 1445 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 MAP3K15Q6ZN16 1313 aa11.12□□□□□ -0.63
CDH13-204ENST00000539548 ZBTB43O43298 467 aa11.11□□□□□ -0.63
CDH13-204ENST00000539548 ZRANB2O95218 330 aaKnown RBP eCLIP11.11□□□□□ -0.63
CDH13-204ENST00000539548 ALX1Q15699 326 aa11.11□□□□□ -0.63
CDH13-204ENST00000539548 SLC9C2Q5TAH2 1124 aa11.11□□□□□ -0.63
CDH13-204ENST00000539548 ZBTB38Q8NAP3 1195 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms