RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 LARP1BQ659C4 914 aaKnown RBP12.66□□□□□ -0.38
CLIP1-210ENST00000538120 FBXL16Q8N461 479 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 MPNDQ8N594 471 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 STRBPQ96SI9 672 aaKnown RBP12.66□□□□□ -0.38
CLIP1-210ENST00000538120 NYXQ9GZU5 481 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 MINPP1Q9UNW1 487 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 COL24A1Q17RW2 1714 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 MYO5AQ9Y4I1 1855 aaKnown RBP12.66□□□□□ -0.38
CLIP1-210ENST00000538120 CCDC24Q8N4L8 307 aa12.65□□□□□ -0.38
CLIP1-210ENST00000538120 MTMR7Q9Y216 660 aa12.65□□□□□ -0.38
CLIP1-210ENST00000538120 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-210ENST00000538120 UQCRHLA0A096LP55 91 aa12.65□□□□□ -0.38
CLIP1-210ENST00000538120 UQCRHP07919 91 aa12.65□□□□□ -0.38
CLIP1-210ENST00000538120 GTF2E1P29083 439 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-210ENST00000538120 CDC37L1Q7L3B6 337 aa12.65□□□□□ -0.38
CLIP1-210ENST00000538120 NBPF5PQ86XG9 351 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-210ENST00000538120 MB21D2Q8IYB1 491 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-210ENST00000538120 SMARCC2Q8TAQ2 1214 aa12.65□□□□□ -0.38
CLIP1-210ENST00000538120 NKX2-3Q8TAU0 364 aa12.65□□□□□ -0.38
CLIP1-210ENST00000538120 GPHNQ9NQX3 736 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-210ENST00000538120 ZNF804BA4D1E1 1349 aa12.65□□□□□ -0.39
CLIP1-210ENST00000538120 TAF1LQ8IZX4 1826 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 VPS37CA5D8V6 355 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-210ENST00000538120 CTDNEP1O95476 244 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 ANTXR2P58335 489 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 MAGEB6Q8N7X4 407 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 C4BP0C0L5 1744 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 ZNF213O14771 459 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 MBD3O95983 291 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 TM4SF1P30408 202 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 EVCP57679 992 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 IRX5P78411 483 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-210ENST00000538120 UBE4AQ14139 1066 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 IER5LQ5T953 404 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 FAM196AQ6ZSG2 479 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 QTRT2Q9H974 415 aaKnown RBP12.64□□□□□ -0.39
CLIP1-210ENST00000538120 TAF1P21675 1872 aa12.64□□□□□ -0.39
CLIP1-210ENST00000538120 CASZ1Q86V15 1759 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 DOCK2Q92608 1830 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 PDCP20941 246 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 PDIA3P30101 505 aaKnown RBP12.63□□□□□ -0.39
CLIP1-210ENST00000538120 GYG1P46976 350 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 DNM1Q05193 864 aaKnown RBP12.63□□□□□ -0.39
CLIP1-210ENST00000538120 MAP3K12Q12852 859 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 TMED8Q6PL24 325 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-210ENST00000538120 NLRP3Q96P20 1036 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 DENND2AQ9ULE3 1009 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 PHF14O94880 888 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 TERF1P54274 439 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 RPS8P62241 208 aaKnown RBP12.63□□□□□ -0.39
CLIP1-210ENST00000538120 ALX1Q15699 326 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 TRAPPC3LQ5T215 181 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 TPTE2Q6XPS3 522 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 TBC1D10CQ8IV04 446 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 NSUN7Q8NE18 718 aaKnown RBP12.63□□□□□ -0.39
CLIP1-210ENST00000538120 ZNF274Q96GC6 653 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-210ENST00000538120 LLPHQ9BRT6 129 aaKnown RBP12.63□□□□□ -0.39
CLIP1-210ENST00000538120 EPB41L4AQ9HCS5 686 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-210ENST00000538120 ATP6V1DQ9Y5K8 247 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 A0A1B0GUL6 1792 aa12.63□□□□□ -0.39
CLIP1-210ENST00000538120 COL1A1P02452 1464 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-210ENST00000538120 PDCD7Q8N8D1 485 aaKnown RBP12.62□□□□□ -0.39
CLIP1-210ENST00000538120 AIDAQ96BJ3 306 aa12.62□□□□□ -0.39
CLIP1-210ENST00000538120 IQSEC3Q9UPP2 1182 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-210ENST00000538120 PATL2C9JE40 543 aaKnown RBP12.62□□□□□ -0.39
CLIP1-210ENST00000538120 PRC1O43663 620 aa12.62□□□□□ -0.39
CLIP1-210ENST00000538120 MBD4O95243 580 aa12.62□□□□□ -0.39
CLIP1-210ENST00000538120 RFC4P35249 363 aa12.62□□□□□ -0.39
CLIP1-210ENST00000538120 CCT2P78371 535 aaKnown RBP12.62□□□□□ -0.39
CLIP1-210ENST00000538120 NCOA7Q8NI08 942 aa12.62□□□□□ -0.39
CLIP1-210ENST00000538120 FAM84BQ96KN1 310 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-210ENST00000538120 TSPY26PQ9H489 355 aa12.62□□□□□ -0.39
CLIP1-210ENST00000538120 ARMT1Q9H993 441 aa12.62□□□□□ -0.39
CLIP1-210ENST00000538120 NCOA5Q9HCD5 579 aaKnown RBP12.62□□□□□ -0.39
CLIP1-210ENST00000538120 CCDC39Q9UFE4 941 aa12.62□□□□□ -0.39
CLIP1-210ENST00000538120 POTEFA5A3E0 1075 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 C4AP0C0L4 1744 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 KLRK1P26718 216 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 MCM5P33992 734 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 NFIXQ14938 502 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 FERMT3Q86UX7 667 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 DDX11Q96FC9 970 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 TACC3Q9Y6A5 838 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 SALL1Q9NSC2 1324 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 GSG1L2A8MUP6 293 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 APPP05067 770 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 FAM173BQ6P4H8 233 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 FBXO33Q7Z6M2 555 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 IFNL3Q8IZI9 196 aa12.61□□□□□ -0.39
CLIP1-210ENST00000538120 ZNF830Q96NB3 372 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-210ENST00000538120 COLQQ9Y215 455 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-210ENST00000538120 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.61□□□□□ -0.39
CLIP1-210ENST00000538120 ZMYM6O95789 1325 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 WDR19Q8NEZ3 1342 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 FIBPO43427 364 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 PRKAB2O43741 272 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 ADGRA1Q86SQ6 560 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 LCORLQ8N3X6 602 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 PNPLA7Q6ZV29 1317 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 PTPDC1A2A3K4 754 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms