RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 TATDN2Q93075 761 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 NAT10Q9H0A0 1025 aaKnown RBP12.19□□□□□ -0.46
RTN3-208ENST00000537981 ZRANB1Q9UGI0 708 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 HPCAL4Q9UM19 191 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 PCDHA7Q9UN72 937 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 CDC42BPGQ6DT37 1551 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 SLC27A2O14975 620 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 CCP110O43303 1012 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 CAND2O75155 1236 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 SSBP05455 408 aaKnown RBP eCLIP12.19□□□□□ -0.46
RTN3-208ENST00000537981 CDC25CP30307 473 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 PEX19P40855 299 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 FAM228AQ86W67 206 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 VSTM4Q8IW00 320 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 TC2NQ8N9U0 490 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 STAG1Q8WVM7 1258 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 CDC5LQ99459 802 aaKnown RBP12.19□□□□□ -0.46
RTN3-208ENST00000537981 TRIM6Q9C030 488 aaPredicted RBP12.19□□□□□ -0.46
RTN3-208ENST00000537981 KIF9Q9HAQ2 790 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 RCOR1Q9UKL0 485 aa12.19□□□□□ -0.46
RTN3-208ENST00000537981 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.19□□□□□ -0.46
RTN3-208ENST00000537981 SOS1Q07889 1333 aaPredicted RBP12.19□□□□□ -0.46
RTN3-208ENST00000537981 ARHGAP6O43182 974 aa12.18□□□□□ -0.46
RTN3-208ENST00000537981 TPD52L2O43399 206 aaKnown RBP12.18□□□□□ -0.46
RTN3-208ENST00000537981 SURF6O75683 361 aaKnown RBP12.18□□□□□ -0.46
RTN3-208ENST00000537981 TOP1P11387 765 aaKnown RBP12.18□□□□□ -0.46
RTN3-208ENST00000537981 HDGFP51858 240 aaKnown RBP12.18□□□□□ -0.46
RTN3-208ENST00000537981 E2F5Q15329 346 aa12.18□□□□□ -0.46
RTN3-208ENST00000537981 CEP57Q86XR8 500 aa12.18□□□□□ -0.46
RTN3-208ENST00000537981 A1CFQ9NQ94 594 aaKnown RBP12.18□□□□□ -0.46
RTN3-208ENST00000537981 GIGYF1O75420 1035 aaPredicted RBP12.18□□□□□ -0.46
RTN3-208ENST00000537981 RPSAP08865 295 aaKnown RBP12.18□□□□□ -0.46
RTN3-208ENST00000537981 NBPF7P0C2Y1 421 aaPredicted RBP12.18□□□□□ -0.46
RTN3-208ENST00000537981 USP8P40818 1118 aa12.18□□□□□ -0.46
RTN3-208ENST00000537981 DDR1Q08345 913 aa12.18□□□□□ -0.46
RTN3-208ENST00000537981 CNTROBQ8N137 903 aa12.18□□□□□ -0.46
RTN3-208ENST00000537981 FNBP4Q8N3X1 1017 aaPredicted RBP12.18□□□□□ -0.46
RTN3-208ENST00000537981 MICAL1Q8TDZ2 1067 aa12.18□□□□□ -0.46
RTN3-208ENST00000537981 PPP1R12BO60237 982 aaPredicted RBP12.17□□□□□ -0.46
RTN3-208ENST00000537981 ERLIN1O75477 346 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 TM6SF1Q9BZW5 370 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 TERF2IPQ9NYB0 399 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 CDC23Q9UJX2 597 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.17□□□□□ -0.46
RTN3-208ENST00000537981 TNRQ92752 1358 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 CHGBP05060 677 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 IL13P35225 146 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 GNGT1P63211 74 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 AKAP17AQ02040 695 aaKnown RBP12.17□□□□□ -0.46
RTN3-208ENST00000537981 GRIK3Q13003 919 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 SPRED3Q2MJR0 410 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 ZC3H12AQ5D1E8 599 aaKnown RBP12.17□□□□□ -0.46
RTN3-208ENST00000537981 ZNF569Q5MCW4 686 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 RHPN1Q8TCX5 695 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.17□□□□□ -0.46
RTN3-208ENST00000537981 C14orf93Q9H972 538 aaKnown RBP12.17□□□□□ -0.46
RTN3-208ENST00000537981 LMTK3Q96Q04 1460 aa12.17□□□□□ -0.46
RTN3-208ENST00000537981 ARHGEF28Q8N1W1 1705 aaKnown RBP12.17□□□□□ -0.46
RTN3-208ENST00000537981 MPHOSPH10O00566 681 aaKnown RBP12.16□□□□□ -0.46
RTN3-208ENST00000537981 EPB41L2O43491 1005 aaKnown RBP12.16□□□□□ -0.46
RTN3-208ENST00000537981 EIF2S2P20042 333 aaKnown RBP12.16□□□□□ -0.46
RTN3-208ENST00000537981 CLNS1AP54105 237 aaKnown RBP12.16□□□□□ -0.46
RTN3-208ENST00000537981 RAD9BQ6WBX8 426 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 ZBTB10Q96DT7 871 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 CFAP45Q9UL16 551 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 CHUKO15111 745 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 RPS6KB1P23443 525 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 CDC27P30260 824 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 AARSP49588 968 aaKnown RBP eCLIP12.16□□□□□ -0.46
RTN3-208ENST00000537981 LONRF3Q496Y0 759 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 SPTY2D1Q68D10 685 aaPredicted RBP12.16□□□□□ -0.46
RTN3-208ENST00000537981 OTUD7BQ6GQQ9 843 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 BLOC1S2Q6QNY1 142 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 IRAK4Q9NWZ3 460 aa12.16□□□□□ -0.46
RTN3-208ENST00000537981 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.16□□□□□ -0.46
RTN3-208ENST00000537981 NPHP4O75161 1426 aaPredicted RBP12.16□□□□□ -0.46
RTN3-208ENST00000537981 MINK1Q8N4C8 1332 aaPredicted RBP12.16□□□□□ -0.46
RTN3-208ENST00000537981 KIF3CO14782 793 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 RDXP35241 583 aaKnown RBP12.15□□□□□ -0.46
RTN3-208ENST00000537981 IDI1Q13907 227 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 RRS1Q15050 365 aaKnown RBP12.15□□□□□ -0.46
RTN3-208ENST00000537981 FKBP15Q5T1M5 1219 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 SLC35F6Q8N357 371 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 MSL3Q8N5Y2 521 aaKnown RBP12.15□□□□□ -0.46
RTN3-208ENST00000537981 KLC4Q9NSK0 619 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 MYH8P13535 1937 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 ABCC6O95255 1503 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 ENO4A6NNW6 628 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 PDCLQ13371 301 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 KIF4BQ2VIQ3 1234 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 WLSQ5T9L3 541 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 NBPF10Q6P3W6 841 aaKnown RBP12.15□□□□□ -0.46
RTN3-208ENST00000537981 PPP1R42Q7Z4L9 355 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 POTEDQ86YR6 584 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 MRPS27Q92552 414 aaKnown RBP12.15□□□□□ -0.46
RTN3-208ENST00000537981 SETBP1Q9Y6X0 1596 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 CRYBG1Q9Y4K1 1723 aa12.15□□□□□ -0.46
RTN3-208ENST00000537981 TET3O43151 1660 aa12.15□□□□□ -0.47
RTN3-208ENST00000537981 CPSF1Q10570 1443 aaKnown RBP12.14□□□□□ -0.47
RTN3-208ENST00000537981 A0A0D9SFI3 127 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms