RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 SUSD4Q5VX71 490 aa16.14■□□□□ 0.17
LIG1-203ENST00000536218 INTS5Q6P9B9 1019 aaKnown RBP16.14■□□□□ 0.17
LIG1-203ENST00000536218 PLA2G12BQ9BX93 195 aa16.14■□□□□ 0.17
LIG1-203ENST00000536218 RIPOR2Q9Y4F9 1068 aa16.14■□□□□ 0.17
LIG1-203ENST00000536218 ITGB4P16144 1822 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 SASH3O75995 380 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 HAND2P61296 217 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 KRT85P78386 507 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 ZMYM1Q5SVZ6 1142 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 USPL1Q5W0Q7 1092 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 BICD2Q8TD16 824 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 ZNF622Q969S3 477 aaKnown RBP eCLIP16.13■□□□□ 0.177e-7■■□□□ 12.2
LIG1-203ENST00000536218 NGLY1Q96IV0 654 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 ORC3Q9UBD5 711 aaPredicted RBP16.13■□□□□ 0.17
LIG1-203ENST00000536218 MAST3O60307 1309 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 COL14A1Q05707 1796 aaKnown RBP16.13■□□□□ 0.17
LIG1-203ENST00000536218 KIF2AO00139 706 aaPredicted RBP16.13■□□□□ 0.17
LIG1-203ENST00000536218 PDE8AO60658 829 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 HSPD1P10809 573 aaKnown RBP16.13■□□□□ 0.17
LIG1-203ENST00000536218 CCZ1BP86790 482 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 CCZ1P86791 482 aaPredicted RBP16.13■□□□□ 0.17
LIG1-203ENST00000536218 STOX1Q6ZVD7 989 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 BRF1Q92994 677 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 TJP1Q07157 1748 aa16.13■□□□□ 0.17
LIG1-203ENST00000536218 KRT32Q14532 448 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 HELLSQ9NRZ9 838 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 ADAM21Q9UKJ8 722 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 EIF5P55010 431 aaKnown RBP16.12■□□□□ 0.17
LIG1-203ENST00000536218 ANKRD1Q15327 319 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 FAM182BQ5T319 152 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 CDCA7Q9BWT1 371 aaPredicted RBP16.12■□□□□ 0.17
LIG1-203ENST00000536218 SEC31BQ9NQW1 1179 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 DNAI1Q9UI46 699 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 CEP83Q9Y592 693 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 URI1O94763 535 aaPredicted RBP16.12■□□□□ 0.17
LIG1-203ENST00000536218 CCDC172P0C7W6 258 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 ATP2B1P20020 1258 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 FOSBP53539 338 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 SKIDA1Q1XH10 827 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 DDX11Q96FC9 970 aa16.12■□□□□ 0.17
LIG1-203ENST00000536218 A0A087WWV3 80 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 TOM1O60784 492 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 ACTN2P35609 894 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 REXO1L1PQ8IX06 675 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 L2HGDHQ9H9P8 463 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 NIP7Q9Y221 180 aaKnown RBP eCLIP16.11■□□□□ 0.17
LIG1-203ENST00000536218 SH3TC1Q8TE82 1336 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 CDHR2Q9BYE9 1310 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 ERVV-1B6SEH8 477 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 FOXR1Q6PIV2 292 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 ZNF34Q8IZ26 560 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 SPATA31A5Q5VU36 1347 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 SPATA31A7Q8IWB4 1347 aa16.11■□□□□ 0.17
LIG1-203ENST00000536218 UBAP1LF5GYI3 381 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 JAK2O60674 1132 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 IDH1O75874 414 aaKnown RBP16.1■□□□□ 0.17
LIG1-203ENST00000536218 BICDL1Q6ZP65 573 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 COL16A1Q07092 1604 aaPredicted RBP16.1■□□□□ 0.17
LIG1-203ENST00000536218 MCAMP43121 646 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 MAGEA9P43362 315 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 CARD6Q9BX69 1037 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 THRAP3Q9Y2W1 955 aaKnown RBP16.1■□□□□ 0.17
LIG1-203ENST00000536218 PALLDQ8WX93 1383 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 TBC1D8O95759 1140 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 TSGA10IPQ3SY00 556 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 PTF1AQ7RTS3 328 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 PPP1R13BQ96KQ4 1090 aa16.1■□□□□ 0.17
LIG1-203ENST00000536218 PUS7LQ9H0K6 701 aaKnown RBP16.1■□□□□ 0.17
LIG1-203ENST00000536218 EIF3CLB5ME19 914 aaKnown RBP16.09■□□□□ 0.17
LIG1-203ENST00000536218 NR1I2O75469 434 aa16.09■□□□□ 0.17
LIG1-203ENST00000536218 PHKA1P46020 1223 aa16.09■□□□□ 0.17
LIG1-203ENST00000536218 FAM177A1Q8N128 213 aaPredicted RBP16.09■□□□□ 0.17
LIG1-203ENST00000536218 SPATA32Q96LK8 384 aa16.09■□□□□ 0.17
LIG1-203ENST00000536218 MPHOSPH8Q99549 860 aa16.09■□□□□ 0.17
LIG1-203ENST00000536218 EIF3CQ99613 913 aaKnown RBP16.09■□□□□ 0.17
LIG1-203ENST00000536218 PDE8BO95263 885 aa16.09■□□□□ 0.17
LIG1-203ENST00000536218 CCT2P78371 535 aaKnown RBP16.09■□□□□ 0.17
LIG1-203ENST00000536218 CDC37L1Q7L3B6 337 aa16.09■□□□□ 0.17
LIG1-203ENST00000536218 UTP14AQ9BVJ6 771 aaKnown RBP16.09■□□□□ 0.17
LIG1-203ENST00000536218 FBXO3Q9UK99 471 aa16.09■□□□□ 0.17
LIG1-203ENST00000536218 ELP1O95163 1332 aa16.09■□□□□ 0.17
LIG1-203ENST00000536218 CDC25BP30305 580 aa16.08■□□□□ 0.17
LIG1-203ENST00000536218 EVCP57679 992 aa16.08■□□□□ 0.17
LIG1-203ENST00000536218 APOBRQ0VD83 1088 aa16.08■□□□□ 0.17
LIG1-203ENST00000536218 E4F1Q66K89 784 aaPredicted RBP16.08■□□□□ 0.16
LIG1-203ENST00000536218 DSCC1Q9BVC3 393 aa16.08■□□□□ 0.16
LIG1-203ENST00000536218 CXorf56Q9H5V9 222 aa16.08■□□□□ 0.16
LIG1-203ENST00000536218 DDX19AQ9NUU7 478 aaKnown RBP16.08■□□□□ 0.16
LIG1-203ENST00000536218 VPS18Q9P253 973 aa16.08■□□□□ 0.16
LIG1-203ENST00000536218 JCADQ9P266 1359 aa16.08■□□□□ 0.16
LIG1-203ENST00000536218 E7EWF7 191 aa16.08■□□□□ 0.16
LIG1-203ENST00000536218 SLC9C2Q5TAH2 1124 aa16.08■□□□□ 0.16
LIG1-203ENST00000536218 C11orf57Q6ZUT1 292 aaPredicted RBP16.08■□□□□ 0.16
LIG1-203ENST00000536218 CCDC91Q7Z6B0 441 aa16.08■□□□□ 0.16
LIG1-203ENST00000536218 EXOC4Q96A65 974 aa16.08■□□□□ 0.16
LIG1-203ENST00000536218 CLSTN2Q9H4D0 955 aa16.08■□□□□ 0.16
LIG1-203ENST00000536218 FAM212AQ96EL1 285 aa16.07■□□□□ 0.16
LIG1-203ENST00000536218 MRFAP1L1Q96HT8 127 aa16.07■□□□□ 0.16
LIG1-203ENST00000536218 TAOK2Q9UL54 1235 aa16.07■□□□□ 0.16
LIG1-203ENST00000536218 RFX7Q2KHR2 1363 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms